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CryoEM structure of DDB1-VprBP complex in ARM-up conformation
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7v7b
Q-score: 0.262
To Be Published
- Cryoem structure of ddb1-vprbp complex in "arm-up" conformation (Complex from Homo sapiens)
- Ddb1- and cul4-associated factor 1 (169 kDa, Protein from Homo sapiens)
- Dna damage-binding protein 1 (127 kDa, Protein from Homo sapiens)
CryoEM structure of DDB1-VprBP-Vpr-UNG2(94-313) complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7v7c
Q-score: 0.283
To Be Published
- Ddb1-vprbp-vpr-ung2(94-313) complex (660 kDa, Complex from Homo sapiens)
- Uracil-dna glycosylase (25 kDa, Protein from Homo sapiens)
- Ddb1- and cul4-associated factor 1 (169 kDa, Protein from Homo sapiens)
- Protein vpr (11 kDa, Protein from Human immunodeficiency virus 1)
- Dna damage-binding protein 1 (127 kDa, Protein from Homo sapiens)
Structure of yeast Ubr1 in complex with Ubc2 and monoubiquitinated N-degron
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7mey
Q-score: 0.407
Pan M, Zheng Q, Wang T, Liang L, Mao J, Zuo C, Ding R, Ai H, Xie Y, Si D, Yu Y, Liu L, Zhao M
Nature (2021) 600 pp. 334-338 [ DOI: doi:10.1038/s41586-021-04097-8 Pubmed: 34789879 ]
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Yeast ubr1 in complex with ubc2 and monoubiquitinated n-degron (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Ubiquitin-conjugating enzyme e2 2 (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Monoubiquitinated n-degron (4 kDa, Protein from Saccharomyces cerevisiae S288C)
- E3 ubiquitin-protein ligase ubr1 (225 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 2-(ethylamino)ethane-1-thiol (105 Da, Ligand)
- Zinc ion (65 Da, Ligand)
Nog1-TAP associated immature ribosomal particle population E from S. cerevisiae
Resolution: 4.72 Å
EM Method: Single-particle
Fitted PDBs: 7ohr
Q-score: 0.317
Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P
PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l30 (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (13 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Baker's yeast)
- 25s rrna (cytosine(2870)-c(5))-methyltransferase (69 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- Nog1-tap associated immature ribosomal particles. (Complex from Saccharomyces cerevisiae S288C)
- Nuclear gtp-binding protein nug1 (57 kDa, Protein from Baker's yeast)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Baker's yeast)
- Rrna-processing protein ebp2 (49 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein brx1 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l25 (15 kDa, Protein from Baker's yeast)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
- 27s pre-rrna (guanosine(2922)-2'-o)-methyltransferase (96 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein erb1 (91 kDa, Protein from Baker's yeast)
- Atp-dependent rna helicase has1 (56 kDa, Protein from Baker's yeast)
- Ribosome assembly factor mrt4 (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Baker's yeast)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- Pescadillo homolog (69 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- Nucleolar protein 16 (26 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nsa2 (29 kDa, Protein from Baker's yeast)
- 60s ribosome subunit biogenesis protein nip7 (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
- Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
- Ribosome biogenesis protein rlp24 (24 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein ytm1 (51 kDa, Protein from Baker's yeast)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- Nucleolar complex-associated protein 3 (75 kDa, Protein from Baker's yeast)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7ohp
Q-score: 0.295
Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P
PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
- Atp-dependent rna helicase has1 (56 kDa, Protein from Baker's yeast)
- Ribosome assembly factor mrt4 (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Baker's yeast)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- Pescadillo homolog (69 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- Nucleolar protein 16 (26 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Nog1-tap associated immature ribosomal particles from cells depleted of rpl25. (Complex from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nsa2 (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
- Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein erb1 (91 kDa, Protein from Baker's yeast)
Nog1-TAP associated immature ribosomal particle population C from S. cerevisiae
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7ohq
Q-score: 0.417
Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P
PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l30 (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l43-a (10 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- Nog1-tap associated immature ribosomal particles. (Complex from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- Nuclear gtp-binding protein nug1 (57 kDa, Protein from Baker's yeast)
- Regulator of ribosome biosynthesis (23 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-a (19 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l25 (15 kDa, Protein from Baker's yeast)
- Rrna-processing protein cgr1 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nop53 (52 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
- Ribosome assembly protein 4 (57 kDa, Protein from Baker's yeast)
- Ribosome assembly factor mrt4 (27 kDa, Protein from Baker's yeast)
- Nucleolar gtp-binding protein 2 (55 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Baker's yeast)
- Upf0642 protein ybl028c (12 kDa, Protein from Baker's yeast)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- Pescadillo homolog (69 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
- 5s rrna (38 kDa, RNA from Saccharomyces cerevisiae S288c)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nsa2 (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
- Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
- Ribosome biogenesis protein rlp24 (24 kDa, Protein from Baker's yeast)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein rpf2 (39 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
Nog1-TAP associated immature ribosomal particle population F from S. cerevisiae
Resolution: 4.38 Å
EM Method: Single-particle
Fitted PDBs: 7ohs
Q-score: 0.28
Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P
PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- Nog1-tap associated immature ribosomal particles. (Complex from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Baker's yeast)
- Protein mak16 (35 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein brx1 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
- Ribosome production factor 1 (35 kDa, Protein from Baker's yeast)
- Ribosomal rna-processing protein 1 (33 kDa, Protein from Baker's yeast)
- Atp-dependent rna helicase has1 (56 kDa, Protein from Baker's yeast)
- Ribosome assembly factor mrt4 (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Baker's yeast)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- Pescadillo homolog (69 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nsa1 (51 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- Nucleolar protein 16 (26 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nsa2 (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
- Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
- Ribosome biogenesis protein rlp24 (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein erb1 (91 kDa, Protein from Baker's yeast)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7ohv
Q-score: 0.324
Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P
PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- Nog1-tap associated immature ribosomal particles from cells depleted of rpl2. (Complex from Saccharomyces cerevisiae S288C)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Baker's yeast)
- Rrna-processing protein ebp2 (49 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein brx1 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l25 (15 kDa, Protein from Baker's yeast)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
- 27s pre-rrna (guanosine(2922)-2'-o)-methyltransferase (96 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein erb1 (91 kDa, Protein from Baker's yeast)
- Atp-dependent rna helicase has1 (56 kDa, Protein from Baker's yeast)
- Ribosome assembly factor mrt4 (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Baker's yeast)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- Pescadillo homolog (69 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- Nucleolar protein 16 (26 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nsa2 (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
- Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
- Ribosome biogenesis protein rlp24 (24 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein ytm1 (51 kDa, Protein from Baker's yeast)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7ohw
Q-score: 0.361
Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P
PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Baker's yeast)
- Protein mak16 (35 kDa, Protein from Baker's yeast)
- Rrna-processing protein ebp2 (49 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein brx1 (33 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
- Ribosome production factor 1 (35 kDa, Protein from Baker's yeast)
- Ribosomal rna-processing protein 1 (33 kDa, Protein from Baker's yeast)
- Atp-dependent rna helicase has1 (56 kDa, Protein from Baker's yeast)
- Ribosome assembly factor mrt4 (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Baker's yeast)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- Pescadillo homolog (69 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nsa1 (51 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- Nucleolar protein 16 (26 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Nog1-tap associated immature ribosomal particles from cells depleted of rpl25. (Complex from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nsa2 (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
- Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein erb1 (91 kDa, Protein from Baker's yeast)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ohx
Q-score: 0.345
Poll G, Pilsl M, Griesenbeck J, Tschochner H, Milkereit P
PLoS One (2021) 16 pp. e0252497-e0252497 [ DOI: doi:10.1371/journal.pone.0252497 Pubmed: 34813592 ]
- Nog1-tap associated immature ribosomal particles from cells depleted of rpl34. (Complex from Saccharomyces cerevisiae S288C)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein 15 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- Eukaryotic translation initiation factor 6 (26 kDa, Protein from Baker's yeast)
- Protein mak16 (35 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 25s rrna (1 MDa, RNA from Saccharomyces cerevisiae S288C)
- Proteasome-interacting protein cic1 (42 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
- Ribosome production factor 1 (35 kDa, Protein from Baker's yeast)
- Ribosomal rna-processing protein 1 (33 kDa, Protein from Baker's yeast)
- Atp-dependent rna helicase has1 (56 kDa, Protein from Baker's yeast)
- Ribosome assembly factor mrt4 (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- Nucleolar gtp-binding protein 1 (74 kDa, Protein from Baker's yeast)
- 5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae S288c)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- Pescadillo homolog (69 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein nsa1 (51 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (28 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein rlp7 (36 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- Nucleolar protein 16 (26 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
- Its2 (74 kDa, RNA from Saccharomyces cerevisiae S288C)
- Ribosome biogenesis protein rlp24 (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- Ribosome biogenesis protein erb1 (91 kDa, Protein from Baker's yeast)