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Human p97 double hexamer conformer II with ATPgammaS bound
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 7vcs
Q-score: 0.401
Gao H, Li F, Ji Z, Shi Z, Li Y, Yu H
Cell Discov (2022) 8 pp. 19-19 [ DOI: doi:10.1038/s41421-022-00379-1 Pubmed: 35190543 ]
- Transitional endoplasmic reticulum atpase (90 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Human p97 double hexamer conformer ii with atpgammas bound (1 MDa, Complex from Homo sapiens)
Human p97 single hexamer conformer III with D1-ATPgammaS and D2-ADP bound
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7vct
Q-score: 0.452
Gao H, Li F, Ji Z, Shi Z, Li Y, Yu H
Cell Discov (2022) 8 pp. 19-19 [ DOI: doi:10.1038/s41421-022-00379-1 Pubmed: 35190543 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transitional endoplasmic reticulum atpase (90 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Human p97 single hexamer conformer iii with d1-atpgammas and d2-adp bound (1 MDa, Complex from Homo sapiens)
Human p97 double hexamer conformer I with D1-ATPgammaS and D2-ADP bound
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 7vcu
Q-score: 0.414
Gao H, Li F, Ji Z, Shi Z, Li Y, Yu H
Cell Discov (2022) 8 pp. 19-19 [ DOI: doi:10.1038/s41421-022-00379-1 Pubmed: 35190543 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transitional endoplasmic reticulum atpase (90 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Human p97 double hexamer conformer i with d1-atpgammas and d2-adp bound (1 MDa, Complex from Homo sapiens)
Human p97 single hexamer conformer I with ATPgammaS bound
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7vcv
Q-score: 0.463
Gao H, Li F, Ji Z, Shi Z, Li Y, Yu H
Cell Discov (2022) 8 pp. 19-19 [ DOI: doi:10.1038/s41421-022-00379-1 Pubmed: 35190543 ]
- Transitional endoplasmic reticulum atpase (90 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Human p97 double hexamer conformer ii with atpgammas bound (1 MDa, Complex from Homo sapiens)
Human p97 single hexamer conformer II with ATPgammaS bound
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7vcx
Q-score: 0.493
Gao H, Li F, Ji Z, Shi Z, Li Y, Yu H
Cell Discov (2022) 8 pp. 19-19 [ DOI: doi:10.1038/s41421-022-00379-1 Pubmed: 35190543 ]
- Transitional endoplasmic reticulum atpase (90 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Human p97 double hexamer conformer ii with atpgammas bound (1 MDa, Complex from Homo sapiens)
Cdc48-Ufd1/Npl4 complex processing poly-ubiquitinated substrate in the presence of ATP
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6oa9
Q-score: 0.282
Twomey EC, Ji Z, Wales TE, Bodnar NO, Ficarro SB, Marto JA, Engen JR, Rapoport TA
Science (2019) 365 [ Pubmed: 31249135 DOI: doi:10.1126/science.aax1033 ]
- Nuclear protein localization protein 4 (65 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Ubiquitin (8 kDa, Protein from Saccharomyces cerevisiae)
- Cdc48-npl4 complex processing poly-ubiquitinated substrate in the presence of atp (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cell division control protein 48 (92 kDa, Protein from Saccharomyces cerevisiae)
Cdc48-Ufd1/Npl4 complex processing poly-ubiquitinated substrate in the presence of ADP-BeFx, state 1
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6oaa
Q-score: 0.295
Twomey EC, Ji Z, Wales TE, Bodnar NO, Ficarro SB, Marto JA, Engen JR, Rapoport TA
Science (2019) 365 [ Pubmed: 31249135 DOI: doi:10.1126/science.aax1033 ]
- Beryllium trifluoride ion (66 Da, Ligand)
- Nuclear protein localization protein 4 (65 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Ubiquitin (8 kDa, Protein from Saccharomyces cerevisiae)
- Cell division control protein 48 (92 kDa, Protein from Saccharomyces cerevisiae S288C)
- Cdc48-npl4 complex processing poly-ubiquitinated substrate in the presence of adp-befx, state 1 (Complex from Saccharomyces cerevisiae)
Cdc48-Ufd1/Npl4 complex processing poly-ubiquitinated substrate in the presence of ADP-BeFx, state 2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6oab
Q-score: 0.306
Twomey EC, Ji Z, Wales TE, Bodnar NO, Ficarro SB, Marto JA, Engen JR, Rapoport TA
Science (2019) 365 [ Pubmed: 31249135 DOI: doi:10.1126/science.aax1033 ]
- Beryllium trifluoride ion (66 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cdc48-npl4 complex processing poly-ubiquitinated substrate in the presence of adp-befx, state 2 (Complex from Saccharomyces cerevisiae)
- Cell division control protein 48 (92 kDa, Protein from Saccharomyces cerevisiae)
- Poly(alanine) substrate (1 kDa, Protein from Saccharomyces cerevisiae)