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Acyl-ACP synthetase structure bound to MC7-ACP
Resolution: 2.51 Å
EM Method: Single-particle
Fitted PDBs: 8i8d
Q-score: 0.555
Huang H, Wang C, Chang S, Cui T, Xu Y, Zhang H, Zhou C, Zhang X, Feng Y
To Be Published
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- 7-methoxy-7-oxidanylidene-heptanoic acid (174 Da, Ligand)
- Adenosine monophosphate (347 Da, Ligand)
- Acyl carrier protein (8 kDa, Protein from Escherichia coli)
- N~3~-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-n-(2-sulfanylethyl)-beta-alaninamide (358 Da, Ligand)
- Acyl-acp synthetase bound to mc7-acp (Complex from Vibrio harveyi)
Acyl-ACP synthetase structure bound to C18:1-ACP
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 8i8e
Q-score: 0.524
Huang H, Wang C, Chang S, Cui T, Xu Y, Zhang H, Zhou C, Zhang X, Feng Y
To Be Published
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Oleic acid (282 Da, Ligand)
- 4'-phosphopantetheine (358 Da, Ligand)
- Adenosine monophosphate (347 Da, Ligand)
- Acyl carrier protein (8 kDa, Protein from Escherichia coli)
- Acyl-acp synthetase bound to c18:1-acp (Complex from Vibrio harveyi)
Acyl-ACP synthetase structure bound to AMP-C18:1
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 8i6m
Q-score: 0.57
Huang H, Wang C, Chang S, Cui T, Xu Y, Zhang H, Zhou C, Zhang X, Feng Y
To Be Published
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Adenosine monophosphate (347 Da, Ligand)
- Oleic acid (282 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Acyl-acp synthetase bound to amp-c18:1 (Complex from Vibrio harveyi)
Acyl-ACP synthetase structure bound to oleic acid
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 8i35
Q-score: 0.567
Huang H, Wang C, Chang S, Cui T, Xu Y, Zhang H, Zhou C, Zhang X, Feng Y
To Be Published
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Acyl-acp synthetase bound to oleic acid (Complex from Vibrio harveyi)
- Oleic acid (282 Da, Ligand)
Acyl-ACP synthetase structure bound to AMP-PNP in the presence of MgCl2
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8i3i
Q-score: 0.6
Huang H, Wang C, Chang S, Cui T, Xu Y, Zhang H, Zhou C, Zhang X, Feng Y
To Be Published
- Acyl-acp synthetase bound to amp-pnp (Complex from Vibrio harveyi)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
Acyl-ACP synthetase structure bound to ATP.
Resolution: 2.41 Å
EM Method: Single-particle
Fitted PDBs: 8i49
Q-score: 0.596
Huang H, Wang C, Chang S, Cui T, Xu Y, Zhang H, Zhou C, Zhang X, Feng Y
To Be Published
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- Acyl-acp synthetase bound to atp (Complex from Vibrio harveyi)
- Adenosine-5'-triphosphate (507 Da, Ligand)
Acyl-ACP synthetase structure bound to AMP-MC7
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 8i51
Q-score: 0.545
Huang H, Wang C, Chang S, Cui T, Xu Y, Zhang H, Zhou C, Zhang X, Feng Y
To Be Published
- Acyl-acyl carrier protein synthetase (60 kDa, Protein from Vibrio harveyi)
- 7-methoxy-7-oxidanylidene-heptanoic acid (174 Da, Ligand)
- Adenosine monophosphate (347 Da, Ligand)
- Acyl-acp synthetase bound to amp-mc7 (Complex from Vibrio harveyi)
- Magnesium ion (24 Da, Ligand)
Zhao S, Shen L, Li X, Tao Q, Li Z, Xu C, Zhou C, Yang Y, Sang M, Han G, Yu LJ, Kuang T, Shen JR, Wang W
Nat Commun (2023) 14 pp. 8164-8164 [ Pubmed: 38071196 DOI: doi:10.1038/s41467-023-44055-8 ]
- Chlorophyll a (893 Da, Ligand)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Psbw (5 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-j, fucoxanthin chlorophyll a/c binding protein (17 kDa, Protein from Stephanocyclus meneghinianus)
- Bicarbonate ion (61 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Psbe (8 kDa, Protein from Stephanocyclus meneghinianus)
- Psbj (3 kDa, Protein from Stephanocyclus meneghinianus)
- Psbh (7 kDa, Protein from Stephanocyclus meneghinianus)
- Psbm (4 kDa, Protein from Stephanocyclus meneghinianus)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Psby (3 kDa, Protein from Stephanocyclus meneghinianus)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Fcpii-h2, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Psbb (53 kDa, Protein from Stephanocyclus meneghinianus)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Psb34 (2 kDa, Protein from Stephanocyclus meneghinianus)
- Psbx (3 kDa, Protein from Stephanocyclus meneghinianus)
- Psbl (4 kDa, Protein from Stephanocyclus meneghinianus)
- Chloride ion (35 Da, Ligand)
- Psbk (4 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-k, fucoxanthin chlorophyll a/c binding protein (13 kDa, Protein from Stephanocyclus meneghinianus)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Cm-psii-fcpii (Complex from Stephanocyclus meneghinianus)
- Psbv (14 kDa, Protein from Stephanocyclus meneghinianus)
- Psbf (3 kDa, Protein from Stephanocyclus meneghinianus)
- Pheophytin a (871 Da, Ligand)
- Psbz (6 kDa, Protein from Stephanocyclus meneghinianus)
- Psbd (37 kDa, Protein from Stephanocyclus meneghinianus)
- Psbc (49 kDa, Protein from Stephanocyclus meneghinianus)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psbq' (16 kDa, Protein from Stephanocyclus meneghinianus)
- Beta-carotene (536 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Psba (36 kDa, Protein from Stephanocyclus meneghinianus)
- Psbu (10 kDa, Protein from Stephanocyclus meneghinianus)
- Psbi (3 kDa, Protein from Stephanocyclus meneghinianus)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Fcpii-i, fucoxanthin chlorophyll a/c binding protein (23 kDa, Protein from Stephanocyclus meneghinianus)
- Psbt (3 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-h1, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- Psbo (26 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-g, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
Structure of FCP trimer in Cyclotella meneghiniana
Resolution: 2.72 Å
EM Method: Single-particle
Fitted PDBs: 8j7z
Q-score: 0.591
Zhao S, Shen L, Li X, Tao Q, Li Z, Xu C, Zhou C, Yang Y, Sang M, Han G, Yu LJ, Kuang T, Shen JR, Wang W
Nat Commun (2023) 14 pp. 8164-8164 [ Pubmed: 38071196 DOI: doi:10.1038/s41467-023-44055-8 ]
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll c1 (610 Da, Ligand)
- Cm-fcp-trimer (Complex from Stephanocyclus meneghinianus)
- Fcp (19 kDa, Protein from Stephanocyclus meneghinianus)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
Structure of PSII-FCPII-G/H complex in the PSII-FCPII supercomplex from Cyclotella meneghiniana
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8w4o
Q-score: 0.531
Zhao S, Shen L, Li X, Tao Q, Li Z, Xu C, Zhou C, Yang Y, Sang M, Han G, Yu LJ, Kuang T, Shen JR, Wang W
Nat Commun (2023) 14 pp. 8164-8164 [ Pubmed: 38071196 DOI: doi:10.1038/s41467-023-44055-8 ]
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Fcpii-g, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-h2, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cm-psii-fcpii-g/h (Complex from Stephanocyclus meneghinianus)
- Fcpii-h1, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)