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Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8vkk
Q-score: 0.439
Mannar D, Saville J, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle K, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
To Be Published
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 2)
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 8vkl
Q-score: 0.331
Mannar D, Saville J, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle K, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
To Be Published
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Sars-cov-2 xbb.1.5 spike protein trimer bound to 2 mouse ace2 molecules (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with mouse ACE2 (conformation 1)
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 8vkm
Q-score: 0.371
Mannar D, Saville J, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle K, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
To Be Published
- Sars-cov-2 xbb.1.5 spike protein trimer bound to mouse ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8vkn
Q-score: 0.513
Mannar D, Saville J, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle K, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
To Be Published
- Angiotensin-converting enzyme 2 (71 kDa, Protein from Mus musculus)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 xbb.1.5 spike protein rbd bound to mouse ace2 (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of SARS-CoV-2 XBB.1.5 spike protein in complex with human ACE2
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 8vko
Q-score: 0.26
Mannar D, Saville J, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle K, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
To Be Published
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 xbb.1.5 spike protein trimer bound to 3 human ace2 molecules (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.77 Å
EM Method: Single-particle
Fitted PDBs: 8vkp
Q-score: 0.519
Mannar D, Saville J, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle K, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
To Be Published
- Processed angiotensin-converting enzyme 2 (70 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 xbb.1.5 spike protein trimer bound to 3 human ace2 molecules (Complex from Severe acute respiratory syndrome coronavirus 2)
Mannar D, Saville J, Poloni C, Zhu X, Bezeruk A, Tidey K, Ahmed S, Tuttle K, Vahdatihassani F, Cholak S, Cook L, Steiner TS, Subramaniam S
To Be Published
Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp and DNA
Resolution: 3.15 Å
EM Method: Single-particle
Fitted PDBs: 8unf
Q-score: 0.447
Marcus K, Huang Y, Subramanian S, Gee CL, Gorday K, Ghaffari-Kashani S, Luo XR, Zheng L, O'Donnell M, Subramaniam S, Kuriyan J
Nat Struct Mol Biol (2024) 31 pp. 424-435 [ DOI: doi:10.1038/s41594-023-01177-3 Pubmed: 38177685 ]
- T4 bacteriophage clamp loader subunit a (gp62) (Complex from Tequatrovirus T4)
- T4 bacteriophage sliding clamp (gp45) (Complex from Tequatrovirus T4)
- Primed dna duplex (Complex from Tequatrovirus T4)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- T4 bacteriophage clamp loader (gp44 + gp62) (Complex from Tequatrovirus T4)
- T4 bacteriophage clamp loader subunits b,c,d,e(gp44) (Complex from Tequatrovirus T4)
- Sliding-clamp-loader large subunit (35 kDa, Protein from Tequatrovirus T4)
- Sliding-clamp-loader small subunit (21 kDa, Protein from Tequatrovirus T4)
- [[[(2r,3s,4r,5r)-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-tris(fluoranyl)beryllium (492 Da, Ligand)
- Primer dna (6 kDa, DNA from Tequatrovirus T4)
- Magnesium ion (24 Da, Ligand)
- Template dna (7 kDa, DNA from Tequatrovirus T4)
- Sliding clamp (24 kDa, Protein from Tequatrovirus T4)
- T4 bacteriophage clamp loader with sliding clamp and dna (gp44+gp62+gp45+dna) (Complex from Tequatrovirus T4)
Cryo-EM structure of T4 Bacteriophage Clamp Loader with Sliding Clamp
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 8unh
Q-score: 0.445
Marcus K, Huang Y, Subramanian S, Gee CL, Gorday K, Ghaffari-Kashani S, Luo XR, Zheng L, O'Donnell M, Subramaniam S, Kuriyan J
Nat Struct Mol Biol (2024) 31 pp. 424-435 [ DOI: doi:10.1038/s41594-023-01177-3 Pubmed: 38177685 ]
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Sliding clamp (24 kDa, Protein from Tequatrovirus T4)
- T4 bacteriophage sliding clamp (gp45) (Complex from Tequatrovirus T4)
- T4 bacteriophage clamp loader (gp44 + gp62) (Complex from Tequatrovirus T4)
- Sliding-clamp-loader small subunit (21 kDa, Protein from Tequatrovirus T4)
- Magnesium ion (24 Da, Ligand)
- Sliding-clamp-loader large subunit (35 kDa, Protein from Tequatrovirus T4)
- T4 bacteriophage clamp loader with sliding clamp (Complex from Tequatrovirus T4)
Cryo-EM imaging scaffold subunits A and B used to display KRAS G12C complex with GDP
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8g3k
Q-score: 0.668
Castells-Graells R, Meador K, Arbing MA, Sawaya MR, Gee M, Cascio D, Gleave E, Debreczeni JE, Breed J, Leopold K, Patel A, Jahagirdar D, Lyons B, Subramaniam S, Phillips C, Yeates TO
PNAS (2023) 120 pp. e2305494120-e2305494120 [ Pubmed: 37669364 DOI: doi:10.1073/pnas.2305494120 ]