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PucE-LH2 complex from Rps. palustris
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ze8
Q-score: 0.509
Qian P, Nguyen-Phan CT, Gardiner AT, Croll TI, Roszak AW, Southall J, Jackson PJ, Vasilev C, Castro-Hartmann P, Sader K, Hunter CN, Cogdell RJ
PNAS (2022) 119 pp. e2210109119-e2210109119 [ DOI: doi:10.1073/pnas.2210109119 Pubmed: 36251992 ]
- Bacteriochlorophyll a (911 Da, Ligand)
- Puca-lh2-gamma (10 kDa, Protein from Rhodopseudomonas palustris)
- Light-harvesting protein (5 kDa, Protein from Rhodopseudomonas palustris)
- Puce-lh2 from rps. palustris (Complex from Rhodopseudomonas palustris ATCC 17001)
- Light-harvesting protein (6 kDa, Protein from Rhodopseudomonas palustris)
- 1,2-dihydro-psi,psi-caroten-1-ol (554 Da, Ligand)
Human voltage-gated potassium channel Kv3.1 (apo condition)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7phh
Q-score: 0.485
Chi G, Liang Q, Sridhar A, Cowgill JB, Sader K, Radjainia M, Qian P, Castro-Hartmann P, Venkaya S, Singh NK, McKinley G, Fernandez-Cid A, Mukhopadhyay SMM, Burgess-Brown NA, Delemotte L, Covarrubias M, Durr KL
Nat Commun (2022) 13 pp. 4087-4087 [ DOI: doi:10.1038/s41467-022-29594-w Pubmed: 35840580 ]
- Homotetrameric complex of human kv3.1 (Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Potassium voltage-gated channel, shaw-related subfamily, member 1 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Human voltage-gated potassium channel Kv3.1 (with Zn)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7phi
Q-score: 0.476
Chi G, Liang Q, Sridhar A, Cowgill JB, Sader K, Radjainia M, Qian P, Castro-Hartmann P, Venkaya S, Singh NK, McKinley G, Fernandez-Cid A, Mukhopadhyay SMM, Burgess-Brown NA, Delemotte L, Covarrubias M, Durr KL
Nat Commun (2022) 13 pp. 4087-4087 [ DOI: doi:10.1038/s41467-022-29594-w Pubmed: 35840580 ]
- Homotetrameric complex of human kv3.1 (Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Potassium voltage-gated channel, shaw-related subfamily, member 1 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Human voltage-gated potassium channel Kv3.1 in dimeric state (with Zn)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7phk
Q-score: 0.381
Chi G, Liang Q, Sridhar A, Cowgill JB, Sader K, Radjainia M, Qian P, Castro-Hartmann P, Venkaya S, Singh NK, McKinley G, Fernandez-Cid A, Mukhopadhyay SMM, Burgess-Brown NA, Delemotte L, Covarrubias M, Durr KL
Nat Commun (2022) 13 pp. 4087-4087 [ DOI: doi:10.1038/s41467-022-29594-w Pubmed: 35840580 ]
- Homotetrameric complex of human kv3.1 (Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Potassium voltage-gated channel, shaw-related subfamily, member 1 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Human voltage-gated potassium channel Kv3.1 (with EDTA)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7phl
Q-score: 0.493
Chi G, Liang Q, Sridhar A, Cowgill JB, Sader K, Radjainia M, Qian P, Castro-Hartmann P, Venkaya S, Singh NK, McKinley G, Fernandez-Cid A, Mukhopadhyay SMM, Burgess-Brown NA, Delemotte L, Covarrubias M, Durr KL
Nat Commun (2022) 13 pp. 4087-4087 [ DOI: doi:10.1038/s41467-022-29594-w Pubmed: 35840580 ]
- Homotetrameric complex of human kv3.1 (Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phoshocholine (734 Da, Ligand)
- Potassium voltage-gated channel, shaw-related subfamily, member 1 (58 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Anthrax Toxin Receptor 1-bound spent particles of Seneca Valley Virus in acidic conditions
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 6adl
Q-score: -0.025
Cao L, Zhang R, Liu T, Sun Z, Hu M, Sun Y, Cheng L, Guo Y, Fu S, Hu J, Li X, Yu C, Wang H, Chen H, Li X, Fry EE, Stuart DI, Qian P, Lou Z, Rao Z
PNAS (2018) 115 pp. 13087-13092 [ DOI: doi:10.1073/pnas.1814309115 Pubmed: 30514821 ]
- Vp1 (25 kDa, Protein from Senecavirus A)
- Anthrax toxin receptor 1 (21 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Vp2 (27 kDa, Protein from Senecavirus A)
- Seneca valley virus (Virus from Seneca valley virus)
- Vp3 (26 kDa, Protein from Senecavirus A)
Resolution: 3.58 Å
EM Method: Single-particle
Fitted PDBs: 6rqf
Q-score: 0.511
Malone LA, Qian P, Mayneord GE, Hitchcock A, Farmer DA, Thompson RF, Swainsbury DJK, Ranson NA, Hunter CN, Johnson MP
Nature (2019) 575 pp. 535-539 [ DOI: doi:10.1038/s41586-019-1746-6 Pubmed: 31723268 ]
- Spinach cytochrome b6f complex with native bound plastoquinone and thylakoid lipids (Complex from Spinacia oleracea)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Cytochrome b6-f complex iron-sulfur subunit, chloroplastic (18 kDa, Protein from Spinach)
- Cytochrome b6 (24 kDa, Protein from Spinach)
- Cytochrome b6-f complex subunit 4 (17 kDa, Protein from Spinach)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Cytochrome b6-f complex subunit 8 (3 kDa, Protein from Spinach)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- Cytochrome b6-f complex subunit 7 (3 kDa, Protein from Spinach)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Cytochrome f (31 kDa, Protein from Spinach)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome b6-f complex subunit 5 (4 kDa, Protein from Spinach)
- Cytochrome b6-f complex subunit 6 (3 kDa, Protein from Spinach)
- Heme c (618 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
Anthrax Toxin Receptor 1-bound the Seneca Valley Virus in neutral conditions
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 6adr
Q-score: -0.016
Cao L, Zhang R, Liu T, Sun Z, Hu M, Sun Y, Cheng L, Guo Y, Fu S, Hu J, Li X, Yu C, Wang H, Chen H, Li X, Fry EE, Stuart DI, Qian P, Lou Z, Rao Z
PNAS (2018) 115 pp. 13087-13092 [ DOI: doi:10.1073/pnas.1814309115 Pubmed: 30514821 ]
- Vp4 (7 kDa, Protein from Seneca valley virus)
- Anthrax toxin receptor 1 (21 kDa, Protein from Homo sapiens)
- Seneca valley virus (Virus from Seneca valley virus)
- Vp3 (26 kDa, Protein from Seneca valley virus)
- Magnesium ion (24 Da, Ligand)
- Water (18 Da, Ligand)
- Vp1 (28 kDa, Protein from Seneca valley virus)
- Vp2 (29 kDa, Protein from Seneca valley virus)
Structure of Seneca Valley Virus in neutral condition
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 6adt
Q-score: -0.03
Cao L, Zhang R, Liu T, Sun Z, Hu M, Sun Y, Cheng L, Guo Y, Fu S, Hu J, Li X, Yu C, Wang H, Chen H, Li X, Fry EE, Stuart DI, Qian P, Lou Z, Rao Z
PNAS (2018) 115 pp. 13087-13092 [ DOI: doi:10.1073/pnas.1814309115 Pubmed: 30514821 ]
- Vp4 (7 kDa, Protein from Seneca valley virus)
- Seneca valley virus (Virus from Seneca valley virus)
- Vp3 (26 kDa, Protein from Seneca valley virus)
- Vp2 (29 kDa, Protein from Seneca valley virus)
- Vp1 (28 kDa, Protein from Seneca valley virus)