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Cryo-EM micrographs of Sweet Potato Mild Mottle Virus
Chase O, Javed A, Byrne MJ, Thuenemann EC, Lomonosoff GP, Ranson NA, Lopez-Moya JJ
Communications Biology (2023)
Image sets:
Cryo-EM micrographs of Sweet Potato Feathery Mosaic Virus
Chase O, Javed A, Byrne MJ, Thuenemann EC, Lomonosoff GP, Ranson NA, Lopez-Moya JJ
Communications Biology (2023)
Image sets:
Cryo-EM structure of serine 87 O-GlcNAc-modified alpha-synuclein fibrils
Resolution: 4.8 Å
EM Method: Helical reconstruction
Fitted PDBs: 8gf7
Q-score: 0.356
Balana AT, Mahul-Mellier AL, Nguyen BA, Horvath M, Javed A, Hard ER, Jasiqi Y, Singh P, Afrin S, Pedretti R, Singh V, Lee VM, Luk KC, Saelices L, Lashuel HA, Pratt MR
Nat Chem Biol (2024) 20 pp. 646-655 [ DOI: doi:10.1038/s41589-024-01551-2 Pubmed: 38347213 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Alpha-synuclein fibrils (Complex from Homo sapiens)
- Alpha-synuclein (8 kDa, Protein from Homo sapiens)
Six DNA Helix Bundle nanopore - State 1
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7ywh
Q-score: 0.08
Ahmad K, Javed A, Lanphere C, Coveney PV, Orlova EV, Howorka S
Nat Commun (2023) 14 pp. 3630-3630 [ Pubmed: 37336895 DOI: doi:10.1038/s41467-023-38681-5 ]
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Six dna helix bundle dna nanopore (Complex)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
Six DNA duplex bundle nanopore - State 2
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7ywi
Q-score: 0.098
Ahmad K, Javed A, Lanphere C, Coveney PV, Orlova EV, Howorka S
Nat Commun (2023) 14 pp. 3630-3630 [ Pubmed: 37336895 DOI: doi:10.1038/s41467-023-38681-5 ]
- Six dna helix bundle nanopore (Complex)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
Six DNA Helix Bundle nanopore - State 3
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7ywl
Q-score: 0.102
Ahmad K, Javed A, Lanphere C, Coveney PV, Orlova EV, Howorka S
Nat Commun (2023) 14 pp. 3630-3630 [ Pubmed: 37336895 DOI: doi:10.1038/s41467-023-38681-5 ]
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Six dna helix bundle dna nanopore (Complex)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
Six DNA Helix Bundle nanopore - State 4
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7ywn
Q-score: 0.091
Ahmad K, Javed A, Lanphere C, Coveney PV, Orlova EV, Howorka S
Nat Commun (2023) 14 pp. 3630-3630 [ Pubmed: 37336895 DOI: doi:10.1038/s41467-023-38681-5 ]
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Six dna helix bundle dna nanopore (Complex)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
Six DNA Helix Bundle nanopore - State 5
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7ywo
Q-score: 0.086
Ahmad K, Javed A, Lanphere C, Coveney PV, Orlova EV, Howorka S
Nat Commun (2023) 14 pp. 3630-3630 [ Pubmed: 37336895 DOI: doi:10.1038/s41467-023-38681-5 ]
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Six dna helix bundle dna nanopore (Complex)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
- Dna (50-mer) (15 kDa, DNA from DNA molecule)
CryoEM structure of sweet potato feathery mottle virus VLP
Resolution: 2.6 Å
EM Method: Helical reconstruction
Fitted PDBs: 8acb
Q-score: 0.564
Chase O, Javed A, Byrne MJ, Thuenemann EC, Lomonossoff GP, Ranson NA, Lopez-Moya JJ
Commun Biol (2023) 6 pp. 433-433 [ Pubmed: 37076658 DOI: doi:10.1038/s42003-023-04799-x ]
- Genome polyprotein (25 kDa, Protein from Sweet potato feathery mottle virus)
- Sweet potato feathery mottle virus (380 kDa, Virus from Sweet potato feathery mottle virus)
- Single-stranded rna (1 kDa, RNA from Ipomoea batatas)
CryoEM structure of sweet potato mild mottle virus VLP
Resolution: 2.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 8acc
Q-score: 0.534
Chase O, Javed A, Byrne MJ, Thuenemann EC, Lomonossoff GP, Ranson NA, Lopez-Moya JJ
Commun Biol (2023) 6 pp. 433-433 [ Pubmed: 37076658 DOI: doi:10.1038/s42003-023-04799-x ]
- Single-stranded rna (1 kDa, RNA from Nicotiana tabacum)
- Sweet potato mild mottle virus (38 MDa, Virus from Sweet potato mild mottle virus)
- Polyprotein (34 kDa, Protein from Sweet potato mild mottle virus)