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E. coli BAM complex (BamABCDE) bound to dynobactin A
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7r1w
Q-score: 0.423
Miller RD, Iinishi A, Modaresi SM, Yoo BK, Curtis TD, Lariviere PJ, Liang L, Son S, Nicolau S, Bargabos R, Morrissette M, Gates MF, Pitt N, Jakob RP, Rath P, Maier T, Malyutin AG, Kaiser JT, Niles S, Karavas B, Ghiglieri M, Bowman SEJ, Rees DC, Hiller S, Lewis K
Nat Microbiol (2022) 7 pp. 1661-1672 [ Pubmed: 36163500 DOI: doi:10.1038/s41564-022-01227-4 ]
- Bam complex (Complex)
- Outer membrane protein assembly factor bamd (27 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bame (13 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bama (90 kDa, Protein from Escherichia coli K-12)
- Dynobactin a (1 kDa, Protein from Photorhabdus australis)
- Outer membrane protein assembly factor bamb (42 kDa, Protein from Escherichia coli K-12)
- Outer membrane protein assembly factor bamc (36 kDa, Protein from Escherichia coli K-12)
- Dynobactin a (Complex from Photorhabdus australis)
- Bam (Complex from Escherichia coli K-12)
Ketosynthase domain of module 4 from Brevibacillus Brevis orphan BGC11
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7zma
Q-score: 0.488
Tittes YU, Herbst DA, Martin SFX, Munoz-Hernandez H, Jakob RP, Maier T
Sci Adv (2022) 8 pp. eabo6918-eabo6918 [ Pubmed: 36129979 DOI: doi:10.1126/sciadv.abo6918 ]
Ketosynthase domain of module 3 from Brevibacillus Brevis orphan BGC11
Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 7zmd
Q-score: 0.535
Tittes YU, Herbst DA, Martin SFX, Munoz-Hernandez H, Jakob RP, Maier T
Sci Adv (2022) 8 pp. eabo6918-eabo6918 [ Pubmed: 36129979 DOI: doi:10.1126/sciadv.abo6918 ]
K3DAK4 bimodule core of BGC11 from Brevibacillus brevis
Resolution: 6.8 Å
EM Method: Single-particle
Fitted PDBs: 7zsk
Q-score: 0.085
Tittes YU, Herbst DA, Martin SFX, Munoz-Hernandez H, Jakob RP, Maier T
Sci Adv (2022) 8 pp. eabo6918-eabo6918 [ Pubmed: 36129979 DOI: doi:10.1126/sciadv.abo6918 ]
Structure of the darobactin-bound E. coli BAM complex (BamABCDE)
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 7nri
Q-score: 0.508
Kaur H, Jakob RP, Marzinek JK, Green R, Imai Y, Bolla JR, Agustoni E, Robinson CV, Bond PJ, Lewis K, Maier T, Hiller S
Nature (2021) 593 pp. 125-129 [ DOI: doi:10.1038/s41586-021-03455-w Pubmed: 33854236 ]
- 3-pyridin-4-yl-2,4-dihydro-indeno[1,2-.c.]pyrazole (971 Da, Protein from synthetic construct)
- Outer membrane protein assembly factor bame (11 kDa, Protein from Escherichia coli (strain K12))
- Outer membrane protein assembly factor bama (88 kDa, Protein from Escherichia coli (strain K12))
- Outer membrane protein assembly factor bamc (34 kDa, Protein from Escherichia coli (strain K12))
- Outer membrane protein assembly factor bamb (40 kDa, Protein from Escherichia coli (strain K12))
- Bamabcde complex (Complex from Escherichia coli K-12)
- Outer membrane protein assembly factor bamd (25 kDa, Protein from Escherichia coli (strain K12))
High resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica
Righetto RD, Anton L, Adaixo R, Jakob RP, Zivanov J, Mahi MA, Ringler P, Schwede T, Maier T, Stahlberg H
Nat Commun (2020) 11 [ Pubmed: 33037208 DOI: 10.1038/s41467-020-18870-2 ]
Image sets:
High resolution cryo-EM structure of urease from the pathogen Yersinia enterocolitica
Resolution: 1.98 Å
EM Method: Single-particle
Fitted PDBs: 6yl3
Q-score: 0.767
Righetto RD, Anton L, Adaixo R, Jakob RP, Zivanov J, Mahi MA, Ringler P, Schwede T, Maier T, Stahlberg H
Nat Commun (2020) 11 pp. 5101-5101 [ Pubmed: 33037208 DOI: doi:10.1038/s41467-020-18870-2 ]
- Nickel (ii) ion (58 Da, Ligand)
- Urease oligomer from y. enterocolitica (1 MDa, Complex from Yersinia enterocolitica W22703)
- Urease subunit beta (14 kDa, Protein from Yersinia enterocolitica W22703)
- Urease subunit gamma (11 kDa, Protein from Yersinia enterocolitica W22703)
- Water (18 Da, Ligand)
- Urease subunit alpha (61 kDa, Protein from Yersinia enterocolitica W22703)
ACP2 crosslinked to the KS of the loading/condensing region of the CTB1 PKS
Resolution: 7.1 Å
EM Method: Single-particle
Fitted PDBs: 6fik
Q-score: 0.102
Herbst DA, Huitt-Roehl CR, Jakob RP, Kravetz JM, Storm PA, Alley JR, Townsend CA, Maier T
Nat Chem Biol (2018) 14 pp. 474-479 [ Pubmed: 29610486 DOI: doi:10.1038/s41589-018-0026-3 ]
- Polyketide synthase (140 kDa, Protein from Cercospora nicotianae)
- Ctb1-sat0-ks-mat0=acp2 (Complex from Cercospora nicotianae)
- Polyketide synthase (9 kDa, Protein from Cercospora nicotianae)