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Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens (UltrAuFoil)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8hsb
Q-score: 0.38
Yan Y, Xiao J, Huang F, Xian W, Yu B, Cheng R, Wu H, Lu X, Wang X, Huang W, Li J, Oyejobi GK, Robinson CV, Wu H, Wu D, Liu X, Wang L, Zhu B
Nat Microbiol (2024) [ Pubmed: 38649411 DOI: doi:10.1038/s41564-024-01684-z ]
- Cdng (45 kDa, Protein from Serratia marcescens)
- Type vi secretion protein (18 kDa, Protein from Serratia marcescens)
- Cdng-e2 binary complex (Complex from Serratia marcescens)
Cryo-EM Structure of CdnG-E2 complex from Serratia marcescens
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8yjy
Q-score: 0.426
Yan Y, Xiao J, Huang F, Xian W, Yu B, Cheng R, Wu H, Lu X, Wang X, Huang W, Li J, Oyejobi GK, Robinson CV, Wu H, Wu D, Liu X, Wang L, Zhu B
Nat Microbiol (2024) [ Pubmed: 38649411 DOI: doi:10.1038/s41564-024-01684-z ]
- Type vi secretion protein (18 kDa, Protein from Serratia marcescens)
- Cdng-e2 binary complex (Complex from Serratia marcescens)
- Smcdng (45 kDa, Protein from Serratia marcescens)
Cryo-EM structure of the ClpP degradation system in Streptomyces hawaiiensis
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 8xn4
Q-score: 0.56
Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis
Resolution: 1.96 Å
EM Method: Single-particle
Fitted PDBs: 8xon
Q-score: 0.503
Xu X, Wang Y, Huang W, Li D, Deng Z, Long F
Mbio (2024) 15 pp. e0003124-e0003124 [ DOI: doi:10.1128/mbio.00031-24 Pubmed: 38501868 ]
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Streptomyces hawaiiensis)
- Casein (2 kDa, Protein from Bos taurus)
- Atp-dependent clp protease proteolytic subunit (24 kDa, Protein from Streptomyces hawaiiensis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Clpp1,clpp2,clpc1,casein (Complex from Streptomyces hawaiiensis)
- Ndp-hexose 4-ketoreductase (77 kDa, Protein from Streptomyces hawaiiensis)
Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis
Resolution: 1.84 Å
EM Method: Single-particle
Fitted PDBs: 8xoo
Q-score: 0.514
Xu X, Wang Y, Huang W, Li D, Deng Z, Long F
Mbio (2024) 15 pp. e0003124-e0003124 [ DOI: doi:10.1128/mbio.00031-24 Pubmed: 38501868 ]
- Clpp1,clpp2,clpc1,casein (Complex from Streptomyces hawaiiensis)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Streptomyces hawaiiensis)
- Atp-dependent clp protease proteolytic subunit (24 kDa, Protein from Streptomyces hawaiiensis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Casein (2 kDa, Protein from Bos taurus)
- Ndp-hexose 4-ketoreductase (77 kDa, Protein from Streptomyces hawaiiensis)
Cryo-EM structure of ClpP1P2 in complex with ADEP1 from Streptomyces hawaiiensis
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8xop
Q-score: 0.498
Xu X, Wang Y, Huang W, Li D, Deng Z, Long F
Mbio (2024) 15 pp. e0003124-e0003124 [ DOI: doi:10.1128/mbio.00031-24 Pubmed: 38501868 ]
- Adep1 (736 Da, Protein from synthetic construct)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Streptomyces hawaiiensis)
- Atp-dependent clp protease proteolytic subunit (24 kDa, Protein from Streptomyces hawaiiensis)
- Clpp1,clpp2 (Complex from Streptomyces hawaiiensis)
Cryo-EM structure of a full-length, native Drp1 dimer
Resolution: 5.97 Å
EM Method: Single-particle
Fitted PDBs: 8t1h
Q-score: 0.09
Rochon K, Bauer BL, Roethler NA, Buckley Y, Su CC, Huang W, Ramachandran R, Stoll MSK, Yu EW, Taylor DJ, Mears JA
Nat Commun (2024) 15 pp. 1328-1328 [ DOI: doi:10.1038/s41467-024-45524-4 Pubmed: 38351080 ]
- Dimer complex of native, full length drp1 (164 kDa, Complex from Homo sapiens)
- Dynamin-1-like protein (81 kDa, Protein from Homo sapiens)
48-nm repeat of the native axonemal doublet microtubule from bovine sperm
Leung MR, Zeng J, Wang X, Roelofs MC, Huang W, Zenezini Chiozzi R, Hevler JF, Heck AJR, Dutcher SK, Brown A, Zhang R, Zeev-Ben-Mordehai T
Cell (2023) 186 pp. 2880-2896.e17 [ Pubmed: 37327785 DOI: doi:10.1016/j.cell.2023.05.026 ]
- Ef-hand domain-containing protein (31 kDa, Protein from Bos taurus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Piercer of microtubule wall 2 protein (13 kDa, Protein from Bos taurus)
- Protein fam166c (23 kDa, Protein from Bos taurus)
- Spermatid-specific manchette-related protein 1 (35 kDa, Protein from Bos taurus)
- Outer dense fiber of sperm tails 3b (32 kDa, Protein from Bos taurus)
- Meiosis-specific nuclear structural protein 1 (60 kDa, Protein from Bos taurus)
- Uncharacterized protein mgc137036 (21 kDa, Protein from Bos taurus)
- Tektin bundle interacting protein 1 (24 kDa, Protein from Bos taurus)
- Testis specific serine kinase 6 (30 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 144 (16 kDa, Protein from Bos taurus)
- Dual specificity phosphatase 21 (22 kDa, Protein from Bos taurus)
- Testis expressed 33 (30 kDa, Protein from Bos taurus)
- Chromosome 7 open reading frame 31 (67 kDa, Protein from Bos taurus)
- Piercer of microtubule wall 1 protein (15 kDa, Protein from Bos taurus)
- Theg spermatid protein like (50 kDa, Protein from Bos taurus)
- Uncharacterized protein c4orf45 homolog (22 kDa, Protein from Bos taurus)
- Sperm-associated antigen 8 (51 kDa, Protein from Bos taurus)
- Spermatogenesis-associated protein 48 (49 kDa, Protein from Bos taurus)
- Ef-hand domain-containing family member b (97 kDa, Protein from Bos taurus)
- Coiled-coil domain-containing protein 105 (57 kDa, Protein from Bos taurus)
- Tektin-3 (56 kDa, Protein from Bos taurus)
- Rib43a-like with coiled-coils protein 2 (44 kDa, Protein from Bos taurus)
- Testis-expressed protein 43 (15 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 161 (36 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 141 (12 kDa, Protein from Bos taurus)
- Cilia- and flagella- associated protein 210 (65 kDa, Protein from Bos taurus)
- Tektin-1 (48 kDa, Protein from Bos taurus)
- Parkin coregulated gene protein (29 kDa, Protein from Bos taurus)
- Outer dense fiber of sperm tails 3 (27 kDa, Protein from Bos taurus)
- Testis expressed 49 (15 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 107 (23 kDa, Protein from Bos taurus)
- Chromosome 19 c17orf98 homolog (17 kDa, Protein from Bos taurus)
- Ef-hand domain-containing family member c2 (85 kDa, Protein from Bos taurus)
- 48-nm repeat of the native axonemal doublet microtubule from bovine sperm (Complex from Bos taurus)
- Family with sequence similarity 166 member a (36 kDa, Protein from Bos taurus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin beta-4b chain (49 kDa, Protein from Bos taurus)
- Protein phosphatase 1 regulatory subunit 32 (47 kDa, Protein from Bos taurus)
- Uncharacterized protein c1orf100 homolog (16 kDa, Protein from Bos taurus)
- Tektin-4 (52 kDa, Protein from Bos taurus)
- Atp6v1f neighbor (20 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 45 (65 kDa, Protein from Bos taurus)
- Nucleoside diphosphate kinase 7 (42 kDa, Protein from Bos taurus)
- Cfap97 domain containing 1 (19 kDa, Protein from Bos taurus)
- Tektin-5 (56 kDa, Protein from Bos taurus)
- Tepp protein (24 kDa, Protein from Bos taurus)
- Testis-expressed sequence 37 protein (20 kDa, Protein from Bos taurus)
- Ef-hand calcium-binding domain-containing protein 3 (50 kDa, Protein from Bos taurus)
- Sperm acrosome associated 9 (25 kDa, Protein from Bos taurus)
- Tektin-2 (49 kDa, Protein from Bos taurus)
- Chromosome 20 c5orf49 homolog (16 kDa, Protein from Bos taurus)
- Upf0602 protein c4orf47 homolog (34 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 95 (26 kDa, Protein from Bos taurus)
- Cilia and flagella associated protein 77 (32 kDa, Protein from Bos taurus)
- Tubulin alpha-3 chain (49 kDa, Protein from Bos taurus)
- Uncharacterized protein c10orf82 homolog (26 kDa, Protein from Bos taurus)
- Enkurin (30 kDa, Protein from Bos taurus)
- Outer dense fiber of sperm tails 3 like 1 (30 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 53 (62 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 276 (19 kDa, Protein from Bos taurus)
- Stabilizer of axonemal microtubules 1 (40 kDa, Protein from Bos taurus)
- Ef-hand domain-containing protein 1 (74 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 52 (68 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 68 (20 kDa, Protein from Bos taurus)
- Stabilizer of axonemal microtubules 3 (37 kDa, Protein from Bos taurus)
- Chromosome 13 c20orf85 homolog (15 kDa, Protein from Bos taurus)
- Cilia- and flagella-associated protein 20 (22 kDa, Protein from Bos taurus)
- Magnesium ion (24 Da, Ligand)
- Protein flattop (21 kDa, Protein from Bos taurus)
Inactivate state of Maribacter polysiphoniae Argonuate (short pAgo system)
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8fex
Q-score: 0.462
Shen Z, Yang XY, Xia S, Huang W, Taylor DJ, Nakanishi K, Fu TM
Nature (2023) 621 pp. 154-161 [ DOI: doi:10.1038/s41586-023-06456-z Pubmed: 37494956 ]
- Short pago (58 kDa, Protein from Maribacter polysiphoniae)
- Mapsparta heterodimeric complex(short pago) (Complex from Maribacter polysiphoniae)
- Tir-apaz (53 kDa, Protein from Maribacter polysiphoniae)
Structure of tetramerized MapSPARTA upon guide RNA-mediated target DNA binding
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ffi
Q-score: 0.566
Shen Z, Yang XY, Xia S, Huang W, Taylor DJ, Nakanishi K, Fu TM
Nature (2023) 621 pp. 154-161 [ DOI: doi:10.1038/s41586-023-06456-z Pubmed: 37494956 ]
- Guide rna (6 kDa, RNA from synthetic construct)
- Tir-apaz (53 kDa, Protein from Maribacter polysiphoniae)
- Structure of tetramerized mapsparta upon guide rna-mediated target dna binding (Complex from Maribacter polysiphoniae)
- Short pago (58 kDa, Protein from Maribacter polysiphoniae)
- Target dna (7 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)