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HSV-1 DNA polymerase-processivity factor complex in exonuclease state with 1-bp DNA mismatch
Resolution: 2.12 Å
EM Method: Single-particle
Fitted PDBs: 9enp
Q-score: 0.588
Gustavsson E, Grunewald K, Elias P, Hallberg BM
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae374 Pubmed: 38806233 ]
- Hsv-1 dna polymerase-processivity factor complex in exonuclease state with 1-bp dna mismatch (Complex)
- Water (18 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Dna (Complex from synthetic construct)
- Dna polymerase-processivity factor (Complex from Human alphaherpesvirus 1 strain KOS)
- Dna (46-mer) (13 kDa, DNA from synthetic construct)
- Dna polymerase processivity factor (51 kDa, Protein from Human alphaherpesvirus 1 strain KOS)
- Dna (67-mer) (20 kDa, DNA from synthetic construct)
- Dna polymerase catalytic subunit (136 kDa, Protein from Human alphaherpesvirus 1 strain KOS)
Resolution: 2.12 Å
EM Method: Single-particle
Fitted PDBs: 9enq
Q-score: 0.677
Gustavsson E, Grunewald K, Elias P, Hallberg BM
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae374 Pubmed: 38806233 ]
- Hsv-1 dna polymerase-processivity factor complex in exonuclease state with 1-bp dna mismatch (Complex)
- Water (18 Da, Ligand)
- Calcium ion (40 Da, Ligand)
- Dna (Complex from synthetic construct)
- Dna polymerase-processivity factor (Complex from Human alphaherpesvirus 1 strain KOS)
- Dna (46-mer) (13 kDa, DNA from synthetic construct)
- Dna (67-mer) (20 kDa, DNA from synthetic construct)
- Dna polymerase catalytic subunit (136 kDa, Protein from Human alphaherpesvirus 1 strain KOS)
Gustavsson E, Grunewald K, Elias P, Hallberg BM
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae374 Pubmed: 38806233 ]
- Dna polymerase processivity factor (Protein from Human alphaherpesvirus 1 strain KOS)
- Hsv-1 dna polymerase-processivity factor complex in exonuclease state with 1-bp dna mismatch (Complex)
- Dna (Complex from synthetic construct)
- Dna polymerase-processivity factor (Complex from Human alphaherpesvirus 1 strain KOS)
- Dna polymerase catalytic subunit (Protein from Human alphaherpesvirus 1 strain KOS)
- Dna (DNA from synthetic construct)
Gustavsson E, Grunewald K, Elias P, Hallberg BM
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae374 Pubmed: 38806233 ]
- Hsv-1 dna polymerase-processivity factor complex in exonuclease state with 1-bp dna mismatch (Complex)
- Dna (Complex from synthetic construct)
- Primer dna (DNA from synthetic construct)
- Dna polymerase-processivity factor (Complex from Human alphaherpesvirus 1 strain KOS)
- Dna polymerase catalytic subunit (Protein from Human alphaherpesvirus 1 strain KOS)
- Template dna (DNA from synthetic construct)
Gustavsson E, Grunewald K, Elias P, Hallberg BM
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae374 Pubmed: 38806233 ]
- Dna polymerase processivity factor (Protein from Human alphaherpesvirus 1 strain KOS)
- Hsv-1 dna polymerase-processivity factor complex in exonuclease state with 1-bp dna mismatch (Complex)
- Dna (Complex from synthetic construct)
- Primer dna (DNA from synthetic construct)
- Dna polymerase-processivity factor (Complex from Human alphaherpesvirus 1 strain KOS)
- Template dna (DNA from synthetic construct)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8r6u
Q-score: 0.565
Williams HM, Thorkelsson SR, Vogel D, Busch C, Milewski M, Cusack S, Grunewald K, Quemin ERJ, Rosenthal M
Nucleic Acids Res (2024) [ Pubmed: 38709882 DOI: doi:10.1093/nar/gkae330 ]
- Sftsv l protein in complex with 5' and 3' rna, as well as rna acting as a primer. (240 kDa, Complex from SFTS virus AH12)
- Rna (5'-r(p*cp*up*gp*gp*gp*cp*gp*gp*up*cp*up*up*up*gp*up*gp*u)-3') (8 kDa, RNA from SFTS virus AH12)
- Rna primer (6 kDa, RNA from SFTS virus AH12)
- Magnesium ion (24 Da, Ligand)
- Rna-directed rna polymerase l (235 kDa, Protein from SFTS virus AH12)
- Rna primer tail-end (5 kDa, RNA from SFTS virus AH12)
Resolution: 3.35 Å
EM Method: Single-particle
Fitted PDBs: 8r6w
Q-score: 0.44
Williams HM, Thorkelsson SR, Vogel D, Busch C, Milewski M, Cusack S, Grunewald K, Quemin ERJ, Rosenthal M
Nucleic Acids Res (2024) [ Pubmed: 38709882 DOI: doi:10.1093/nar/gkae330 ]
- Rna (5'-r(*ap*cp*ap*c)-3') (5 kDa, RNA from SFTS virus AH12)
- Sftsv l protein in complex with 5' and 3' rna, as well as rna acting as a primer. (240 kDa, Complex from SFTS virus AH12)
- Rna (5'-r(*(m7g)*ap*ap*a)-3') (5 kDa, RNA from SFTS virus AH12)
- Rna (5'-r(p*cp*up*gp*gp*gp*cp*gp*gp*up*cp*up*up*up*gp*up*gp*u)-3') (8 kDa, RNA from SFTS virus AH12)
- Rna (5'-r(*ap*cp*ap*cp*ap*gp*ap*gp*ap*cp*gp*cp*cp*cp*ap*g)-3') (6 kDa, RNA from SFTS virus AH12)
- Rna-directed rna polymerase l (235 kDa, Protein from SFTS virus AH12)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8r6y
Q-score: 0.456
Williams HM, Thorkelsson SR, Vogel D, Busch C, Milewski M, Cusack S, Grunewald K, Quemin ERJ, Rosenthal M
Nucleic Acids Res (2024) [ Pubmed: 38709882 DOI: doi:10.1093/nar/gkae330 ]
- Rna (5'-r(p*ap*cp*a)-3') (918 Da, RNA from SFTS virus AH12)
- Sftsv l protein in complex with 5' and 3' rna, as well as rna acting as a primer. (240 kDa, Complex from SFTS virus AH12)
- Rna (5'-r(*(m7g)*ap*ap*a)-3') (5 kDa, RNA from SFTS virus AH12)
- 5'-o-[(s)-hydroxy{[(s)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine (483 Da, Ligand)
- Rna (5'-r(p*cp*up*gp*gp*gp*cp*gp*gp*up*ap*ap*ap*up*gp*u)-3') (6 kDa, RNA from SFTS virus AH12)
- Rna (5'-r(*ap*cp*ap*cp*ap*gp*ap*gp*ap*cp*gp*cp*cp*cp*ap*g)-3') (6 kDa, RNA from SFTS virus AH12)
- Magnesium ion (24 Da, Ligand)
- Rna-directed rna polymerase l (235 kDa, Protein from SFTS virus AH12)