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Neisseria meningitidis Type IV pilus SB-GATDH variant
Resolution: 2.99 Å
EM Method: Helical reconstruction
Fitted PDBs: 8p2v
Q-score: 0.573
Fernandez-Martinez D, Kong Y, Goussard S, Zavala A, Gastineau P, Rey M, Ayme G, Chamot-Rooke J, Lafaye P, Vos M, Mechaly A, Dumenil G
Nat Commun (2024) 15 pp. 2414-2414 [ DOI: doi:10.1038/s41467-024-46677-y Pubmed: 38499587 ]
- (2~{r})-~{n}-[(2~{r},3~{s},4~{s},5~{r},6~{r})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide (292 Da, Ligand)
- Pile variant sb containing gatdh and g3p ptms (Complex from Neisseria meningitidis 8013)
- Sn-glycerol-3-phosphate (172 Da, Ligand)
- Neisseria meningitidis pile variant sb-gatdh (17 kDa, Protein from Neisseria meningitidis 8013)
Neisseria meningitidis Type IV pilus SB-DATDH variant
Resolution: 2.51 Å
EM Method: Helical reconstruction
Fitted PDBs: 8p36
Q-score: 0.592
Fernandez-Martinez D, Kong Y, Goussard S, Zavala A, Gastineau P, Rey M, Ayme G, Chamot-Rooke J, Lafaye P, Vos M, Mechaly A, Dumenil G
Nat Commun (2024) 15 pp. 2414-2414 [ DOI: doi:10.1038/s41467-024-46677-y Pubmed: 38499587 ]
- Neisseria meningitidis pile, sb-datdh variant (17 kDa, Protein from Neisseria meningitidis 8013)
- 2,4-bisacetamido-2,4,6-trideoxy-beta-d-glucopyranose (246 Da, Ligand)
- Sn-glycerol-3-phosphate (172 Da, Ligand)
- Pile variant sb containing datdh and g3p ptms (Complex from Neisseria meningitidis 8013)
Neisseria meningitidis Type IV pilus SA-GATDH variant
Resolution: 3.15 Å
EM Method: Helical reconstruction
Fitted PDBs: 8p3b
Q-score: 0.543
Fernandez-Martinez D, Kong Y, Goussard S, Zavala A, Gastineau P, Rey M, Ayme G, Chamot-Rooke J, Lafaye P, Vos M, Mechaly A, Dumenil G
Nat Commun (2024) 15 pp. 2414-2414 [ DOI: doi:10.1038/s41467-024-46677-y Pubmed: 38499587 ]
- (2~{r})-~{n}-[(2~{r},3~{s},4~{s},5~{r},6~{r})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide (292 Da, Ligand)
- Fimbrial protein (17 kDa, Protein from Neisseria meningitidis 8013)
- Sn-glycerol-3-phosphate (172 Da, Ligand)
- Pile variant sa containing gatdh and g3p ptms (Complex from Neisseria meningitidis 8013)
Neisseria meningitidis Type IV pilus SB-GATDH variant bound to the C24 nanobody
Resolution: 2.9 Å
EM Method: Helical reconstruction
Fitted PDBs: 8pij
Q-score: 0.558
Fernandez-Martinez D, Kong Y, Goussard S, Zavala A, Gastineau P, Rey M, Ayme G, Chamot-Rooke J, Lafaye P, Vos M, Mechaly A, Dumenil G
Nat Commun (2024) 15 pp. 2414-2414 [ DOI: doi:10.1038/s41467-024-46677-y Pubmed: 38499587 ]
- (2~{r})-~{n}-[(2~{r},3~{s},4~{s},5~{r},6~{r})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide (292 Da, Ligand)
- Sn-glycerol-3-phosphate (172 Da, Ligand)
- Complex of neisseria meningitidis pile sb-gatdh and the c24 nanobody (Complex from Neisseria meningitidis 8013)
- Pilin (17 kDa, Protein from Neisseria meningitidis 8013)
- C24 nanobody (13 kDa, Protein from Vicugna pacos)
Neisseria meningitidis Type IV pilus SB-DATDH variant bound to the C24 nanobody
Resolution: 2.75 Å
EM Method: Helical reconstruction
Fitted PDBs: 8piz
Q-score: 0.547
Fernandez-Martinez D, Kong Y, Goussard S, Zavala A, Gastineau P, Rey M, Ayme G, Chamot-Rooke J, Lafaye P, Vos M, Mechaly A, Dumenil G
Nat Commun (2024) 15 pp. 2414-2414 [ DOI: doi:10.1038/s41467-024-46677-y Pubmed: 38499587 ]
- C24 nanobody (16 kDa, Protein from Vicugna pacos)
- Sn-glycerol-3-phosphate (172 Da, Ligand)
- Pilin (17 kDa, Protein from Neisseria meningitidis 8013)
- Neisseria meningitidis pile, sb-datdh variant, bound to the c24 nanobody (Complex from Neisseria meningitidis 8013)
- 2,4-bisacetamido-2,4,6-trideoxy-beta-d-glucopyranose (246 Da, Ligand)
Neisseria meningitidis PilE, SB-GATDH variant, bound to the F10 nanobody
Resolution: 2.92 Å
EM Method: Helical reconstruction
Fitted PDBs: 8pjp
Q-score: 0.556
Fernandez-Martinez D, Kong Y, Goussard S, Zavala A, Gastineau P, Rey M, Ayme G, Chamot-Rooke J, Lafaye P, Vos M, Mechaly A, Dumenil G
Nat Commun (2024) 15 pp. 2414-2414 [ DOI: doi:10.1038/s41467-024-46677-y Pubmed: 38499587 ]
- (2~{r})-~{n}-[(2~{r},3~{s},4~{s},5~{r},6~{r})-5-acetamido-2-methyl-4,6-bis(oxidanyl)oxan-3-yl]-2,3-bis(oxidanyl)propanamide (292 Da, Ligand)
- Sn-glycerol-3-phosphate (172 Da, Ligand)
- Nanobody f10 (15 kDa, Protein from Vicugna pacos)
- Pilin (17 kDa, Protein from Neisseria meningitidis 8013)
- Neisseria meningitidis pile, variant sa-gatdh complexed with the f10 nanobody (Complex from Neisseria meningitidis 8013)
Photorhabdus laumondii T6SS-associated Rhs protein carrying the Tre23 toxin domain
Resolution: 3.17 Å
EM Method: Single-particle
Fitted PDBs: 7pq5
Q-score: 0.565
Jurenas D, Rosa LT, Rey M, Chamot-Rooke J, Fronzes R, Cascales E
Nat Commun (2021) 12 pp. 6998-6998 [ DOI: doi:10.1038/s41467-021-27388-0 Pubmed: 34853317 ]
- Tre23 (Complex from Photorhabdus laumondii)
- Tre23 (165 kDa, Protein from Photorhabdus laumondii subsp. laumondii TTO1)
Cryo-EM structure of Human excitatory amino acid transporters-1 (EAAT1) in potassium buffer
Resolution: 3.99 Å
EM Method: Single-particle
Fitted PDBs: 7npw
Q-score: 0.297
Canul-Tec JC, Kumar A, Dhenin J, Assal R, Legrand P, Rey M, Chamot-Rooke J, Reyes N
EMBO J (2022) 41 pp. e108341-e108341 [ DOI: doi:10.15252/embj.2021108341 Pubmed: 34747040 ]
cryo-EM structure of ExbBD from Serratia Marcescens
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 7ajq
Q-score: 0.271
Biou V, Adaixo RJD, Chami M, Coureux PD, Laurent B, Enguene VYN, de Amorim GC, Izadi-Pruneyre N, Malosse C, Chamot-Rooke J, Stahlberg H, Delepelaire P
Commun Biol (2022) 5 pp. 355-355 [ DOI: doi:10.1038/s42003-022-03306-y Pubmed: 35418619 ]
- Biopolymer transport protein exbb (29 kDa, Protein from Serratia marcescens)
- 5-exbb + 2-exbd complex (150 kDa, Complex from Serratia marcescens)
- Biopolymer transport protein exbd (16 kDa, Protein from Serratia marcescens)
Structure of ExbB pentamer from Serratia marcescens by single particle cryo electron microscopy
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6ye4
Q-score: 0.55
Biou V, Adaixo RJD, Chami M, Coureux PD, Laurent B, Enguene VYN, de Amorim GC, Izadi-Pruneyre N, Malosse C, Chamot-Rooke J, Stahlberg H, Delepelaire P
Commun Biol (2022) 5 pp. 355-355 [ DOI: doi:10.1038/s42003-022-03306-y Pubmed: 35418619 ]