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Rba sphaeroides WT RC-LH1 monomer
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 7vny
Q-score: 0.633
Cao P, Bracun L, Yamagata A, Christianson BM, Negami T, Zou B, Terada T, Canniffe DP, Shirouzu M, Li M, Liu LN
Nat Commun (2022) 13 pp. 1977-1977 [ DOI: doi:10.1038/s41467-022-29563-3 Pubmed: 35418573 ]
- Rhodobacter sphaeroides wt rc-lh1 monomer (Complex from Rhodobacter sphaeroides 2.4.1)
- Bacteriochlorophyll a (911 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Reaction center protein l chain (31 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Light-harvesting protein b-875 alpha chain (6 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Bacteriopheophytin b (887 Da, Ligand)
- Reaction center protein h chain (28 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Ubiquinone-10 (863 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Rsp_7571 protein-y pufy (5 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Spheroidene (568 Da, Ligand)
- Light-harvesting protein b-875 beta chain (5 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Intrinsic membrane protein pufx (9 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Reaction center protein m chain (34 kDa, Protein from Cereibacter sphaeroides 2.4.1)
Rba sphaeroides PufY-KO RC-LH1 monomer
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 7vnm
Q-score: 0.591
Cao P, Bracun L, Yamagata A, Christianson BM, Negami T, Zou B, Terada T, Canniffe DP, Shirouzu M, Li M, Liu LN
Nat Commun (2022) 13 pp. 1977-1977 [ DOI: doi:10.1038/s41467-022-29563-3 Pubmed: 35418573 ]
- Bacteriochlorophyll a (911 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Reaction center protein l chain (31 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Light-harvesting protein b-875 alpha chain (6 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Rhodobacter sphaeroides pufy-ko rc-lh1 monomer (Complex from Rhodobacter sphaeroides 2.4.1)
- Reaction center protein h chain (28 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Bacteriopheophytin a (889 Da, Ligand)
- Ubiquinone-10 (863 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Spheroidene (568 Da, Ligand)
- Light-harvesting protein b-875 beta chain (5 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Intrinsic membrane protein pufx (9 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Reaction center protein m chain (34 kDa, Protein from Cereibacter sphaeroides 2.4.1)
Rba sphaeroides PufX-KO RC-LH1
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7voy
Q-score: 0.372
Cao P, Bracun L, Yamagata A, Christianson BM, Negami T, Zou B, Terada T, Canniffe DP, Shirouzu M, Li M, Liu LN
Nat Commun (2022) 13 pp. 1977-1977 [ DOI: doi:10.1038/s41467-022-29563-3 Pubmed: 35418573 ]
- Bacteriochlorophyll a (911 Da, Ligand)
- Reaction center protein l chain (31 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Light-harvesting protein b-875 alpha chain (6 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Ubiquinone-10 (863 Da, Ligand)
- Reaction center protein h chain (28 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Bacteriopheophytin a (889 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Light-harvesting protein b-875 beta chain (5 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Rhodobacter sphaeroides pufx-ko rc-lh1 (Complex from Rhodobacter sphaeroides 2.4.1)
- Reaction center protein m chain (34 kDa, Protein from Cereibacter sphaeroides 2.4.1)
- Speroidenone (594 Da, Ligand)
Structure of RC-LH1-PufX from Rhodobacter veldkampii
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7ddq
Q-score: 0.538
Bracun L, Yamagata A, Christianson BM, Terada T, Canniffe DP, Shirouzu M, Liu LN
Sci Adv (2021) 7 [ Pubmed: 34134992 DOI: doi:10.1126/sciadv.abf8864 ]
- Reaction center protein m chain (34 kDa, Protein from Rhodobacter veldkampii DSM 11550)
- Bacteriochlorophyll a (911 Da, Ligand)
- Antenna pigment protein alpha chain (6 kDa, Protein from Rhodobacter veldkampii DSM 11550)
- Photosynthetic core complex featuring reaction center, lh1 and pufx (Complex from Rhodobacter veldkampii DSM 11550)
- Ubiquinone-10 (863 Da, Ligand)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- Photosynthetic reaction center subunit h (27 kDa, Protein from Rhodobacter veldkampii DSM 11550)
- Spheroidene (568 Da, Ligand)
- Photosynthetic reaction center l subunit (30 kDa, Protein from Rhodobacter veldkampii DSM 11550)
- Pufx (8 kDa, Protein from Rhodobacter veldkampii DSM 11550)
- Fe (iii) ion (55 Da, Ligand)
- Antenna pigment protein beta chain (5 kDa, Protein from Rhodobacter veldkampii DSM 11550)
RC-LH1(16) complex from Rhodopseudomonas palustris
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6z5r
Q-score: 0.603
Swainsbury DJK, Qian P, Jackson PJ, Faries KM, Niedzwiedzki DM, Martin EC, Farmer DA, Malone LA, Thompson RF, Ranson NA, Canniffe DP, Dickman MJ, Holten D, Kirmaier C, Hitchcock A, Hunter CN
Sci Adv (2021) 7 [ Pubmed: 33523887 DOI: doi:10.1126/sciadv.abe2631 ]
- Reaction center-light harvesting complex 1 (3 MDa, Complex from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- (6~{r},10~{s},14~{r},19~{r},23~{s},24~{e},27~{s},28~{e})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol (575 Da, Ligand)
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Cardiolipin (1 kDa, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Light-harvesting complex 1 beta chain (5 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- Bacteriopheophytin a (889 Da, Ligand)
- Light-harvesting complex 1 alpha chain (5 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- Reaction center protein m chain (34 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- Bacteriochlorophyll a (911 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Water (18 Da, Ligand)
- H subunit of photosynthetic reaction center complex (27 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Reaction center protein l chain (30 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- Ubiquinone-10 (863 Da, Ligand)
RC-LH1(14)-W complex from Rhodopseudomonas palustris
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 6z5s
Q-score: 0.593
Swainsbury DJK, Qian P, Jackson PJ, Faries KM, Niedzwiedzki DM, Martin EC, Farmer DA, Malone LA, Thompson RF, Ranson NA, Canniffe DP, Dickman MJ, Holten D, Kirmaier C, Hitchcock A, Hunter CN
Sci Adv (2021) 7 [ Pubmed: 33523887 DOI: doi:10.1126/sciadv.abe2631 ]
- Reaction center-light harvesting complex 1-protein w (3 MDa, Complex from Rhodopseudomonas palustris CGA009)
- Light-harvesting complex 1 alpha chain (7 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- (6~{r},10~{s},14~{r},19~{r},23~{s},24~{e},27~{s},28~{e})-2,6,10,14,19,23,27,31-octamethyldotriaconta-24,28-dien-2-ol (575 Da, Ligand)
- Light harvesting complex 1 protein w (10 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- (4s,7r)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Light-harvesting complex 1 beta chain (7 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- Cardiolipin (1 kDa, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- Reaction center protein m chain (34 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- Bacteriochlorophyll a (911 Da, Ligand)
- Water (18 Da, Ligand)
- H subunit of photosynthetic reaction center complex (27 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- Fe (iii) ion (55 Da, Ligand)
- Reaction center protein l chain (30 kDa, Protein from Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009))
- Ubiquinone-10 (863 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Reaction centre light harvesting complex 1 from Blc. virids
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 6et5
Q-score: 0.469
Qian P, Siebert CA, Wang P, Canniffe DP, Hunter CN
Nature (2018) 556 pp. 203-208 [ Pubmed: 29618818 DOI: doi:10.1038/s41586-018-0014-5 ]
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Bacteriochlorophyll b (909 Da, Ligand)
- Reaction center protein h chain (28 kDa, Protein from Rhodopseudomonas viridis)
- All-trans-1,2-dihydroneurosporene (540 Da, Ligand)
- 15-cis-1,2-dihydroneurosporene (540 Da, Ligand)
- Light-harvesting protein b-1015 gamma chain (2 kDa, Protein from Rhodopseudomonas viridis)
- Menaquinone-9 (785 Da, Ligand)
- Reaction center protein l chain (30 kDa, Protein from Rhodopseudomonas viridis)
- Bacteriopheophytin b (887 Da, Ligand)
- Light-harvesting protein b-1015 beta chain (6 kDa, Protein from Rhodopseudomonas viridis)
- Fe (iii) ion (55 Da, Ligand)
- Lauryl dimethylamine-n-oxide (229 Da, Ligand)
- Reaction centre-light harvesting complex 1 (rc-lh1) (414 kDa, Complex from Blastochloris viridis)
- Light-harvesting protein b-1015 alpha chain (6 kDa, Protein from Rhodopseudomonas viridis)
- Sulfate ion (96 Da, Ligand)
- Reaction center protein m chain (35 kDa, Protein from Rhodopseudomonas viridis)
- Ubiquinone-9 (795 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (37 kDa, Protein from Rhodopseudomonas viridis)