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Godwin ARF, Dajani R, Zhang X, Thomson J, Holmes DF, Adamo CS, Sengle G, Sherratt MJ, Roseman AM, Baldock C
Nat Struct Mol Biol (2023) 30 pp. 608-618 [ Pubmed: 37081316 DOI: doi:10.1038/s41594-023-00950-8 ]
Activity optimized supercomplex state4
Resolution: 8.3 Å
EM Method: Single-particle
Fitted PDBs: 7dkf
Q-score: 0.074
Jeon TJ, Lee SG, Yoo SH, Kim M, Song D, Ryu J, Park H, Kim DS, Hyun J, Kim HM, Ryu SE
Antioxid Redox Signal (2022) [ DOI: doi:10.1089/ars.2021.0114 Pubmed: 34913730 ]
- Cytochrome c oxidase subunit 7b, mitochondrial (9 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 (15 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 (16 kDa, Protein from Bovine)
- Cardiolipin (1 kDa, Ligand)
- Cytochrome b-c1 complex subunit rieske, mitochondrial (21 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 4 (52 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 6 (19 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 (17 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6 (15 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (21 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1 (8 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 2 (26 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3 (9 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10 (21 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 5b, mitochondrial (13 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 5 (68 kDa, Protein from Bovine)
- Supercomplex of electron transport chain complexes (Complex from Bos taurus)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6 (14 kDa, Protein from Bovine)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Cytochrome c oxidase subunit 3 (29 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial (39 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 6a2, mitochondrial (10 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 1, mitochondrial (52 kDa, Protein from Bovine)
- Nadp nicotinamide-adenine-dinucleotide phosphate (743 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial (8 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 subunit c2 (14 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 (10 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 8b, mitochondrial (7 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial (14 kDa, Protein from Bovine)
- Acyl carrier protein, mitochondrial (10 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 10 (6 kDa, Protein from Bovine)
- Heme-a (852 Da, Ligand)
- Cytochrome b-c1 complex subunit 7 (13 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (19 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 7a1, mitochondrial (9 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial (20 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 9 (7 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase 75 kda subunit, mitochondrial (77 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 7c, mitochondrial (7 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 subunit c1, mitochondrial (5 kDa, Protein from Bovine)
- Heme c (618 Da, Ligand)
- Cytochrome b-c1 complex subunit 9 (7 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11 (14 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7 (12 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (19 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial (8 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5 (13 kDa, Protein from Bovine)
- Copper (ii) ion (63 Da, Ligand)
- Cytochrome b (42 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 6b1 (10 kDa, Protein from Bovine)
- 1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 (6 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 1 (57 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 6, mitochondrial (10 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial (10 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial (20 kDa, Protein from Bovine)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial (49 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (36 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 1 (35 kDa, Protein from Bovine)
- Zinc ion (65 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial (16 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 2, mitochondrial (48 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 (11 kDa, Protein from Bovine)
- Flavin mononucleotide (456 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial (26 kDa, Protein from Bovine)
- Iron/sulfur cluster (351 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 (16 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 4l (10 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial (23 kDa, Protein from Bovine)
- Cytochrome c1, heme protein, mitochondrial (35 kDa, Protein from Bovine)
- Cytochrome b-c1 complex subunit 8 (9 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 5 (12 kDa, Protein from Bovine)
- 1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
- Nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial (48 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 5a, mitochondrial (16 kDa, Protein from Bovine)
- Cytochrome c oxidase subunit 6c (8 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial (15 kDa, Protein from Bovine)
- Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (18 kDa, Protein from Bovine)
- Nadh-ubiquinone oxidoreductase chain 2 (39 kDa, Protein from Bovine)
- Magnesium ion (24 Da, Ligand)
Cryo-EM density map of the outer dynein arm core from bovine tracheal cilia
Gui M, Farley H, Anujan P, Anderson JR, Maxwell DW, Whitchurch JB, Botsch JJ, Qiu T, Meleppattu S, Singh SK, Zhang Q, Thompson J, Lucas JS, Bingle CD, Norris DP, Roy S, Brown A
Cell (2021) 184 pp. 5791-5806.e19 [ DOI: doi:10.1016/j.cell.2021.10.007 Pubmed: 34715025 ]
ATP synthase dimer, State1:State1
Spikes TE, Montgomery MG, Walker JE
PNAS (2021) 118 [ Pubmed: 33542155 DOI: doi:10.1073/pnas.2021012118 ]
- Atp synthase epsilon subunit (Protein from Bos taurus)
- Atp synthase alpha subunit (Protein from Bos taurus)
- Atp synthase (Complex from Bos taurus)
- Atp synthase a subunit (Protein from Bos taurus)
- Atp synthase f1 domain (Complex from Bos taurus)
- Atp synthase d subunit (Protein from Bos taurus)
- Atp synthase j subunit (6.8pl) (Protein from Bos taurus)
- Atp synthase k subunit (dapit) (Protein from Bos taurus)
- Atp synthase c subunit (Protein from Bos taurus)
- Atp synthase oscp subunit (Protein from Bos taurus)
- Dimeric bovine atp synthase f1-peripheral stalk domain with if1_1-60_6his (7 kDa, Complex)
- Atp synthase f subunit (Protein from Bos taurus)
- Atp synthase delta subunit (Protein from Bos taurus)
- Atp synthase atp8/a6l subunit (Protein from Bos taurus)
- Atp synthase e subunit (Protein from Bos taurus)
- Atp synthase beta subunit (Protein from Bos taurus)
- Atp synthase inhibitor protein if1 (Protein from Bos taurus)
- Atp synthase gamma subunit (Protein from Bos taurus)
- Atp synthase b subunit (Protein from Bos taurus)
- Atp synthase g subunit (Protein from Bos taurus)
- Atp synthase f6/h subunit (Protein from Bos taurus)
bovine ATP synthase dimer state1:state2
Spikes TE, Montgomery MG, Walker JE
PNAS (2021) 118 [ Pubmed: 33542155 DOI: doi:10.1073/pnas.2021012118 ]
- Atp synthase epsilon subunit (Protein from Bos taurus)
- Atp synthase alpha subunit (Protein from Bos taurus)
- Atp synthase (Complex from Bos taurus)
- Atp synthase a subunit (Protein from Bos taurus)
- Atp synthase d subunit (Protein from Bos taurus)
- Atp synthase j subunit (6.8pl) (Protein from Bos taurus)
- Atp synthase k subunit (dapit) (Protein from Bos taurus)
- Atp synthase c subunit (Protein from Bos taurus)
- Atp synthase oscp subunit (Protein from Bos taurus)
- Bovine dimeric atp synthase (7 kDa, Complex)
- Atp synthase a6l/atp8 subunit (Protein from Bos taurus)
- Atp synthase f subunit (Protein from Bos taurus)
- Atp synthase delta subunit (Protein from Bos taurus)
- Atp synthase e subunit (Protein from Bos taurus)
- Atp synthase beta subunit (Protein from Bos taurus)
- Atp synthase inhibitor protein if1 (Protein from Bos taurus)
- Monomeric bovine atp synthase (Complex from Bos taurus)
- Atp synthase gamma subunit (Protein from Bos taurus)
- Atp synthase b subunit (Protein from Bos taurus)
- Atp synthase g subunit (Protein from Bos taurus)
- Atp synthase f6/h subunit (Protein from Bos taurus)
bovine ATP synthase dimer, state1:state3
Spikes TE, Montgomery MG, Walker JE
PNAS (2021) 118 [ Pubmed: 33542155 DOI: doi:10.1073/pnas.2021012118 ]
- Atp synthase epsilon subunit (Protein from Bos taurus)
- Atp synthase alpha subunit (Protein from Bos taurus)
- Atp synthase a subunit (Protein from Bos taurus)
- Bovine atp synthase (Complex from Bos taurus)
- Atp synthase d subunit (Protein from Bos taurus)
- Atp synthase j subunit (6.8pl) (Protein from Bos taurus)
- Atp synthase k subunit (dapit) (Protein from Bos taurus)
- Atp synthase c subunit (Protein from Bos taurus)
- Atp synthase oscp subunit (Protein from Bos taurus)
- Bovine atp synthase (7 kDa, Complex)
- Atp synthase a6l/atp8 subunit (Protein from Bos taurus)
- Atp synthase f subunit (Protein from Bos taurus)
- Atp synthase delta subunit (Protein from Bos taurus)
- Atp synthase e subunit (Protein from Bos taurus)
- Atp synthase beta subunit (Protein from Bos taurus)
- Atp synthase inhibitor protein if1 (Protein from Bos taurus)
- Monomeric bovine atp synthase (Complex from Bos taurus)
- Atp synthase gamma subunit (Protein from Bos taurus)
- Atp synthase b subunit (Protein from Bos taurus)
- Atp synthase g subunit (Protein from Bos taurus)
- Atp synthase f6/h subunit (Protein from Bos taurus)
bovine ATP synthase state2:state1
Spikes TE, Montgomery MG, Walker JE
PNAS (2021) 118 [ Pubmed: 33542155 DOI: doi:10.1073/pnas.2021012118 ]
bovine ATP synthase dimer state2:state2
Spikes TE, Montgomery MG, Walker JE
PNAS (2021) 118 [ Pubmed: 33542155 DOI: doi:10.1073/pnas.2021012118 ]
bovine ATP synthase dimer state2:state3
Spikes TE, Montgomery MG, Walker JE
PNAS (2021) 118 [ Pubmed: 33542155 DOI: doi:10.1073/pnas.2021012118 ]
bovine ATP synthase dimer state3:state1
Spikes TE, Montgomery MG, Walker JE
PNAS (2021) 118 [ Pubmed: 33542155 DOI: doi:10.1073/pnas.2021012118 ]
- Monomeric bovine atp synthase (Complex from Bos taurus)
- Bovine atp synthase dimer (7 kDa, Complex)
- Bovine atp synthase if1 (Complex from Bos taurus)