Cryo-EM structure of the native rhodopsin dimer from rod photoreceptor cells
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6ofj
Q-score: 0.147
Zhao DY, Poge M, Morizumi T, Gulati S, Van Eps N, Zhang J, Miszta P, Filipek S, Mahamid J, Plitzko JM, Baumeister W, Ernst OP, Palczewski K
J Biol Chem (2019) 294 pp. 14215-14230 [ DOI: doi:10.1074/jbc.RA119.010089 Pubmed: 31399513 ]
Structure of an RNA polymerase II-DSIF transcription elongation complex
Bernecky C, Plitzko JM, Cramer P
Nat Struct Mol Biol (2017) 24 pp. 809-815 [ Pubmed: 28892040 DOI: doi:10.1038/nsmb.3465 ]
- Dna-rna synthetic construct (40 kDa, Complex from synthetic construct)
- Rna polymerase ii (520 kDa, Complex from Bos taurus)
- Dsif (130 kDa, Complex from Homo sapiens)
- Rna polymerase ii-dsif elongation complex (690 kDa, Complex)
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC2
Bernecky C, Plitzko JM, Cramer P
Nat Struct Mol Biol (2017) 24 pp. 809-815 [ Pubmed: 28892040 DOI: doi:10.1038/nsmb.3465 ]
- Dna-rna synthetic construct (40 kDa, Complex from synthetic construct)
- Rna polymerase ii (520 kDa, Complex from Bos taurus)
- Dsif (130 kDa, Complex from Homo sapiens)
- Rna polymerase ii-dsif elongation complex (690 kDa, Complex)
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC3
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5oik
Q-score: 0.373
Bernecky C, Plitzko JM, Cramer P
Nat Struct Mol Biol (2017) 24 pp. 809-815 [ Pubmed: 28892040 DOI: doi:10.1038/nsmb.3465 ]
- Rna polymerase ii (520 kDa, Complex from Bos taurus)
- Dna (43-mer) (13 kDa, DNA from synthetic construct)
- Rna polymerase ii-dsif elongation complex (690 kDa, Complex)
- Transcription elongation factor spt5 (121 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Bos taurus)
- Transcription elongation factor spt4 (13 kDa, Protein from Homo sapiens)
- Uncharacterized protein (17 kDa, Protein from Bos taurus)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Bos taurus)
- Dna-rna synthetic construct (40 kDa, Complex from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (24 kDa, Protein from Bos taurus)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Bos taurus)
- Polymerase (rna) ii (dna directed) polypeptide d (16 kDa, Protein from Bos taurus)
- Dna-directed rna polymerase ii subunit rpb11 (13 kDa, Protein from Bos taurus)
- Dna-directed rna polymerase subunit beta (134 kDa, Protein from Bos taurus)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Bos taurus)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (14 kDa, Protein from Bos taurus)
- Dna-directed rna polymerase ii subunit rpb1 (217 kDa, Protein from Bos taurus)
- Dna (43-mer) (13 kDa, DNA from synthetic construct)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Bos taurus)
- Rna (5'-r(p*up*ap*up*ap*up*ap*cp*ap*up*ap*ap*ap*gp*ap*cp*cp*ap*gp*gp*c)-3') (16 kDa, RNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Dsif (130 kDa, Complex from Homo sapiens)
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC4
Bernecky C, Plitzko JM, Cramer P
Nat Struct Mol Biol (2017) 24 pp. 809-815 [ Pubmed: 28892040 DOI: doi:10.1038/nsmb.3465 ]
- Dna-rna synthetic construct (40 kDa, Complex from synthetic construct)
- Rna polymerase ii (520 kDa, Complex from Bos taurus)
- Dsif (130 kDa, Complex from Homo sapiens)
- Rna polymerase ii-dsif elongation complex (690 kDa, Complex)
Structure of an RNA polymerase II-DSIF transcription elongation complex, DSIF-EC5
Bernecky C, Plitzko JM, Cramer P
Nat Struct Mol Biol (2017) 24 pp. 809-815 [ Pubmed: 28892040 DOI: doi:10.1038/nsmb.3465 ]
- Dna-rna synthetic construct (40 kDa, Complex from synthetic construct)
- Rna polymerase ii (520 kDa, Complex from Bos taurus)
- Dsif (130 kDa, Complex from Homo sapiens)
- Rna polymerase ii-dsif elongation complex (690 kDa, Complex)
Structure of transcribing mammalian RNA polymerase II (EC2)
Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer P
Nature (2016) 529 pp. 551-554 [ Pubmed: 26789250 DOI: doi:10.1038/nature16482 ]
- Dna-rna synthetic construct (30 kDa, Macromolecule from unidentified)
- Bovine pol ii elongation complex (590 kDa, Sample)
- Dna-directed rna polymerase ii (520 kDa, Protein from Bos taurus)
- Dna-directed rna polymerase ii subunit grinl1a (40 kDa, Protein from Homo sapiens)
Structure of transcribing mammalian RNA polymerase II (EC3)
Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer P
Nature (2016) 529 pp. 551-554 [ Pubmed: 26789250 DOI: doi:10.1038/nature16482 ]
- Dna-rna synthetic construct (30 kDa, Macromolecule from unidentified)
- Bovine pol ii elongation complex (590 kDa, Sample)
- Dna-directed rna polymerase ii (520 kDa, Protein from Bos taurus)
- Dna-directed rna polymerase ii subunit grinl1a (40 kDa, Protein from Homo sapiens)
Structure of transcribing mammalian RNA polymerase II (EC1)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5flm
Q-score: 0.442
Bernecky C, Herzog F, Baumeister W, Plitzko JM, Cramer P
Nature (2016) 529 pp. 551-554 [ Pubmed: 26789250 DOI: doi:10.1038/nature16482 ]
- Dna-rna synthetic construct (30 kDa, Macromolecule from unidentified)
- Bovine pol ii elongation complex (590 kDa, Sample)
- Dna-directed rna polymerase ii (520 kDa, Protein from Bos taurus)
- Dna-directed rna polymerase ii subunit grinl1a (40 kDa, Protein from Homo sapiens)