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Resolution: 2.21 Å
EM Method: Single-particle
Fitted PDBs: 8xbs
Q-score: 0.663
Wang R, Cong Y, Qian D, Yan C, Gong D
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae395 Pubmed: 38742627 ]
- Zinc ion (65 Da, Ligand)
- Dimer of sid1 (Complex from Caenorhabditis elegans)
- Cholesterol (386 Da, Ligand)
- Systemic rna interference defective protein 1 (90 kDa, Protein from Caenorhabditis elegans)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
C. elegans SID1 in complex with dsRNA
Resolution: 2.21 Å
EM Method: Single-particle
Fitted PDBs: 8xc1
Q-score: 0.566
Wang R, Cong Y, Qian D, Yan C, Gong D
Nucleic Acids Res (2024) [ DOI: doi:10.1093/nar/gkae395 Pubmed: 38742627 ]
- Rna (50-mer) (16 kDa, RNA from Arabidopsis thaliana)
- Rna (Complex from Arabidopsis thaliana)
- Complex of sid1 and dsrna (Complex)
- Zinc ion (65 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Systemic rna interference defective protein 1 (90 kDa, Protein from Caenorhabditis elegans)
- (2s)-3-(hexadecanoyloxy)-2-[(9z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate (760 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Sid1 (Complex from Caenorhabditis elegans)
- Rna (50-mer) (15 kDa, RNA from Arabidopsis thaliana)
Structure of the C. elegans TMC-2 complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8tkp
Q-score: 0.258
Clark S, Jeong H, Posert R, Goehring A, Gouaux E
PNAS (2024) 121 pp. e2314096121-e2314096121 [ Pubmed: 38354260 DOI: doi:10.1073/pnas.2314096121 ]
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- Transmembrane channel-like protein 2 (136 kDa, Protein from Caenorhabditis elegans)
- Hexadecane (226 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane inner ear expressed protein (12 kDa, Protein from Caenorhabditis elegans)
- C. elegans tmc-2 complex (Complex from Caenorhabditis elegans)
- Calmyrin (calcium and integrin binding protein) homolog (23 kDa, Protein from Caenorhabditis elegans)
- Palmitic acid (256 Da, Ligand)
- Docosane (310 Da, Ligand)
- Calcium ion (40 Da, Ligand)
Resolution: 3.82 Å
EM Method: Single-particle
Fitted PDBs: 8p2m
Q-score: 0.182
Khazma T, Grossman A, Guez-Haddad J, Feng C, Dabas H, Sain R, Weitman M, Zalk R, Isupov MN, Hammarlund M, Hons M, Opatowsky Y
Cell Rep (2023) 42 pp. 113026-113026 [ DOI: doi:10.1016/j.celrep.2023.113026 Pubmed: 37635352 ]
- C. elegans tir1. (Complex from Caenorhabditis elegans)
- Nad(+) hydrolase tir-1 (84 kDa, Protein from Caenorhabditis elegans)
Resolution: 3.75 Å
EM Method: Single-particle
Fitted PDBs: 8ouw
Q-score: 0.329
Xia Y, Sonneville R, Jenkyn-Bedford M, Ji L, Alabert C, Hong Y, Yeeles JTP, Labib KPM
Science (2023) 381 pp. eadi4932-eadi4932 [ Pubmed: 37590372 DOI: doi:10.1126/science.adi4932 ]
- Dna replication licensing factor mcm-6 (91 kDa, Protein from Caenorhabditis elegans)
- Protein timeless homolog (157 kDa, Protein from Caenorhabditis elegans)
- Dna lagging strand template (18 kDa, DNA from Saccharomyces cerevisiae)
- Complex of cmg helicase bound to tim-1/tipn-1 and homodimeric dnsn-1 on fork dna (caenorhabditis elegans) (Complex from Caenorhabditis elegans)
- Dna replication licensing factor mcm-4 (91 kDa, Protein from Caenorhabditis elegans)
- Dna replication licensing factor mcm2 (99 kDa, Protein from Caenorhabditis elegans)
- Dna replication licensing factor mcm3 (90 kDa, Protein from Caenorhabditis elegans)
- Dna leading strand template (26 kDa, DNA from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Probable dna replication complex gins protein psf2 (20 kDa, Protein from Caenorhabditis elegans)
- Dna replication complex gins protein psf3 (21 kDa, Protein from Caenorhabditis elegans)
- Dna replication complex gins protein sld5 (25 kDa, Protein from Caenorhabditis elegans)
- Dna replication licensing factor mcm-5 (85 kDa, Protein from Caenorhabditis elegans)
- Zinc ion (65 Da, Ligand)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Cell division control protein 45 homolog (66 kDa, Protein from Caenorhabditis elegans)
- Protein tipin homolog (27 kDa, Protein from Caenorhabditis elegans)
- Downstream neighbor of son homolog (66 kDa, Protein from Caenorhabditis elegans)
- Dna replication licensing factor mcm7 (81 kDa, Protein from Caenorhabditis elegans)
- Probable dna replication complex gins protein psf1 (23 kDa, Protein from Caenorhabditis elegans)
cryo-EM structure of a CED-4 hexamer
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 8jns
Q-score: 0.263
Life Sci Alliance (2023) 6 [ Pubmed: 37402593 DOI: doi:10.26508/lsa.202302056 ]
- Cell death protein 4 (62 kDa, Protein from Caenorhabditis elegans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ced-4 hexamer (Complex from Caenorhabditis elegans)
- Magnesium ion (24 Da, Ligand)
The Cryo-EM structure of a heptameric CED-4/CED-3 catalytic complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8jo0
Q-score: 0.303
Life Sci Alliance (2023) 6 [ Pubmed: 37402593 DOI: doi:10.26508/lsa.202302056 ]
- Cell death protein 4 (12 kDa, Protein from Caenorhabditis elegans)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Heptameric ced-4/ced-3 catalytic complex (Complex from Caenorhabditis elegans)
- Magnesium ion (24 Da, Ligand)
- Cell death protein 4 (62 kDa, Protein from Caenorhabditis elegans)
cryo-EM structure of the CED-4/CED-3 holoenzyme
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8jol
Q-score: 0.325
Life Sci Alliance (2023) 6 [ Pubmed: 37402593 DOI: doi:10.26508/lsa.202302056 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Cell death protein 3 (56 kDa, Protein from Caenorhabditis elegans)
- Magnesium ion (24 Da, Ligand)
- Cell death protein 4 (62 kDa, Protein from Caenorhabditis elegans)
- Ternary complex of ced-4 with ced-3 card and ced-3 catalytic domain (Complex from Caenorhabditis elegans)
Cryo-EM structure of Ferritin 2 from Caenorhabditis elegans, FTN-2
Resolution: 1.91 Å
EM Method: Single-particle
Fitted PDBs: 8cu8
Q-score: 0.715
Mubarak SMM, Malcolm TR, Brown HG, Hanssen E, Maher MJ, McColl G, Jameson GNL
To Be Published
- Homo 24-mer of ferritin 2 (Complex from Caenorhabditis elegans)
- Ferritin (19 kDa, Protein from Caenorhabditis elegans)
- Fe (iii) ion (55 Da, Ligand)
- Water (18 Da, Ligand)
Cryogenic electron microscopy 3D map of alpha-catenin ortholog, HMP1
Rangarajan ES, Smith EW, Izard T
J Biol Chem (2023) 299 pp. 102817-102817 [ Pubmed: 36539037 DOI: doi:10.1016/j.jbc.2022.102817 ]