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Ghanaian virus fusion glycoprotein (GhV F)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8tvb
Q-score: 0.56
Wang Z, McCallum M, Yan L, Gibson CA, Sharkey W, Park YJ, Dang HV, Amaya M, Person A, Broder CC, Veesler D
PNAS (2024) 121 pp. e2314990121-e2314990121 [ DOI: doi:10.1073/pnas.2314990121 Pubmed: 38593070 ]
- Fusion glycoprotein f0,2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase (96 kDa, Protein from Thermotoga maritima MSB8)
- Prefusion ghanian henipavirus f fused to the i53-50a trimer via an intervening 16 gs linker (Complex from Henipavirus ghanaense)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 7p5h
Q-score: 0.663
Furlan C, Chongdar N, Gupta P, Lubitz W, Ogata H, Blaza JN, Birrell JA
eLife (2022) 11 [ Pubmed: 36018003 DOI: doi:10.7554/eLife.79361 ]
- Fe-hydrogenase, subunit gamma (20 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Tetrameric complex of hydabc protomers (640 kDa, Complex from Thermotoga maritima MSB8)
- Fe-hydrogenase, subunit beta (68 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Flavin mononucleotide (456 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Water (18 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Fe-hydrogenase, subunit alpha (72 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
TmHydABC- T. maritima hydrogenase with bridge closed
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7p8n
Q-score: 0.607
Furlan C, Chongdar N, Gupta P, Lubitz W, Ogata H, Blaza JN, Birrell JA
eLife (2022) 11 [ Pubmed: 36018003 DOI: doi:10.7554/eLife.79361 ]
- Dimer of tmhydabc protomers forming a "closed bridge" between hyda and hydb (640 kDa, Complex from Thermotoga maritima MSB8)
- Fe-hydrogenase, subunit gamma (20 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Fe-hydrogenase, subunit beta (68 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Flavin mononucleotide (456 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Water (18 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Fe-hydrogenase, subunit alpha (72 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
TmHydABC- T. maritima bifurcating hydrogenase with bridge domain closed
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7p91
Q-score: 0.604
Furlan C, Chongdar N, Gupta P, Lubitz W, Ogata H, Blaza JN, Birrell JA
eLife (2022) 11 [ Pubmed: 36018003 DOI: doi:10.7554/eLife.79361 ]
- Zinc ion (65 Da, Ligand)
- Fe-hydrogenase, subunit gamma (20 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Fe-hydrogenase, subunit beta (68 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Flavin mononucleotide (456 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Water (18 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Dimer of tmhydabc protomers in a bridge closed conformation (640 kDa, Complex from Thermotoga maritima MSB8)
- Fe-hydrogenase, subunit alpha (72 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
TmHydABC- T. maritima bifurcating hydrogenase with bridge domain up
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7p92
Q-score: 0.607
Furlan C, Chongdar N, Gupta P, Lubitz W, Ogata H, Blaza JN, Birrell JA
eLife (2022) 11 [ Pubmed: 36018003 DOI: doi:10.7554/eLife.79361 ]
- Fe-hydrogenase, subunit gamma (20 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Open bridge conformation tmhydabc bifurcating hydrogenase (640 kDa, Complex from Thermotoga maritima MSB8)
- Fe-hydrogenase, subunit beta (68 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
- Flavin mononucleotide (456 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Water (18 Da, Ligand)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Fe-hydrogenase, subunit alpha (72 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8))
Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S7D
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 7lii
Q-score: 0.528
Adamson LSR, Tasneem N, Andreas MP, Close W, Jenner EN, Szyszka TN, Young R, Cheah LC, Norman A, MacDermott-Opeskin HI, O'Mara ML, Sainsbury F, Giessen TW, Lau YH
Sci Adv (2022) 8 pp. eabl7346-eabl7346 [ DOI: doi:10.1126/sciadv.abl7346 Pubmed: 35119930 ]
- Maritimacin (29 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099))
- Thermotoga maratima pore mutant s7d (1 MDa, Complex from Thermotoga maritima MSB8)
- Riboflavin (376 Da, Ligand)
Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S1K
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7lij
Q-score: 0.615
Adamson LSR, Tasneem N, Andreas MP, Close W, Jenner EN, Szyszka TN, Young R, Cheah LC, Norman A, MacDermott-Opeskin HI, O'Mara ML, Sainsbury F, Giessen TW, Lau YH
Sci Adv (2022) 8 pp. eabl7346-eabl7346 [ DOI: doi:10.1126/sciadv.abl7346 Pubmed: 35119930 ]
- Maritimacin (30 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099))
- Thermotoga maratima pore mutant s1k (1 MDa, Complex from Thermotoga maritima MSB8)
- Riboflavin (376 Da, Ligand)
Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S1R
Resolution: 2.91 Å
EM Method: Single-particle
Fitted PDBs: 7lik
Q-score: 0.617
Adamson LSR, Tasneem N, Andreas MP, Close W, Jenner EN, Szyszka TN, Young R, Cheah LC, Norman A, MacDermott-Opeskin HI, O'Mara ML, Sainsbury F, Giessen TW, Lau YH
Sci Adv (2022) 8 pp. eabl7346-eabl7346 [ DOI: doi:10.1126/sciadv.abl7346 Pubmed: 35119930 ]
- Maritimacin (30 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099))
- Thermotoga maratima pore mutant s1r (1 MDa, Complex from Thermotoga maritima MSB8)
- Riboflavin (376 Da, Ligand)
Thermotoga maritima Encapsulin Nanocompartment Pore Mutant SE3
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7lil
Q-score: 0.601
Adamson LSR, Tasneem N, Andreas MP, Close W, Jenner EN, Szyszka TN, Young R, Cheah LC, Norman A, MacDermott-Opeskin HI, O'Mara ML, Sainsbury F, Giessen TW, Lau YH
Sci Adv (2022) 8 pp. eabl7346-eabl7346 [ DOI: doi:10.1126/sciadv.abl7346 Pubmed: 35119930 ]
- Maritimacin (30 kDa, Protein from Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099))
- Riboflavin (376 Da, Ligand)
- Thermotoga maratima pore mutant se3 (1 MDa, Complex from Thermotoga maritima MSB8)
Thermotoga maritima Encapsulin Nanocompartment Pore Mutant S6E
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 7lim
Q-score: 0.633
Adamson LSR, Tasneem N, Andreas MP, Close W, Jenner EN, Szyszka TN, Young R, Cheah LC, Norman A, MacDermott-Opeskin HI, O'Mara ML, Sainsbury F, Giessen TW, Lau YH
Sci Adv (2022) 8 pp. eabl7346-eabl7346 [ DOI: doi:10.1126/sciadv.abl7346 Pubmed: 35119930 ]