Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.
Structure of Rabies SAD-B19 L-P complex from cryo-EM
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6ueb
Q-score: 0.435
Horwitz JA, Jenni S, Harrison SC, Whelan SPJ
PNAS (2020) 117 pp. 2099-2107 [ DOI: doi:10.1073/pnas.1918809117 Pubmed: 31953264 ]
- Zinc ion (65 Da, Ligand)
- Large structural protein (243 kDa, Protein from Rabies virus (strain SAD B19))
- Rabies lyssavirus strain sad-b19 l-p complex (Complex from Rabies virus (strain SAD B19))
- Phosphoprotein,phosphoprotein (4 kDa, Protein from Rabies virus (strain SAD B19))
Structure of AtTPC1(DDE) reconstituted in saposin A
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6e1m
Q-score: 0.462
Kintzer AF, Green EM, Dominik PK, Bridges M, Armache JP, Deneka D, Kim SS, Hubbell W, Kossiakoff AA, Cheng Y, Stroud RM
PNAS (2018) 115 pp. E9095-E9104 [ Pubmed: 30190435 DOI: doi:10.1073/pnas.1805651115 ]
- Calcium ion (40 Da, Ligand)
- Attpc1(dde) (Complex from Arabidopsis thaliana)
- Palmitic acid (256 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Water (18 Da, Ligand)
- Two pore calcium channel protein 1 (84 kDa, Protein from Arabidopsis thaliana)
Structure of AtTPC1(DDE) in state 1
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6e1n
Q-score: 0.398
Kintzer AF, Green EM, Dominik PK, Bridges M, Armache JP, Deneka D, Kim SS, Hubbell W, Kossiakoff AA, Cheng Y, Stroud RM
PNAS (2018) 115 pp. E9095-E9104 [ Pubmed: 30190435 DOI: doi:10.1073/pnas.1805651115 ]
- Calcium ion (40 Da, Ligand)
- Attpc1(dde) (Complex from Arabidopsis thaliana)
- Palmitic acid (256 Da, Ligand)
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Water (18 Da, Ligand)
- Two pore calcium channel protein 1 (84 kDa, Protein from Arabidopsis thaliana)
Structure of AtTPC1(DDE) in state 2
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6e1p
Q-score: 0.355
Kintzer AF, Green EM, Dominik PK, Bridges M, Armache JP, Deneka D, Kim SS, Hubbell W, Kossiakoff AA, Cheng Y, Stroud RM
PNAS (2018) 115 pp. E9095-E9104 [ Pubmed: 30190435 DOI: doi:10.1073/pnas.1805651115 ]
- Calcium ion (40 Da, Ligand)
- Attpc1(dde) (Complex from Arabidopsis thaliana)
- Palmitic acid (256 Da, Ligand)
- Water (18 Da, Ligand)
- Two pore calcium channel protein 1 (84 kDa, Protein from Arabidopsis thaliana)
Molecular basis of human kinesin-8 function and inhibition
Resolution: 5.5 Å
EM Method: Helical reconstruction
Fitted PDBs: 5oam
Q-score: 0.255
Locke J, Joseph AP, Pena A, Mockel MM, Mayer TU, Topf M, Moores CA
PNAS (2017) 114 pp. E9539-E9548 [ Pubmed: 29078367 DOI: doi:10.1073/pnas.1712169114 ]
- 13-protofilament microtuble-bound human kinesin-8 motor domain neck-linker without nucleotide (Complex)
- Taxol (853 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Kinesin-8 motor domain neck-linker (Complex from Homo sapiens)
- Tublin, beta (Complex from Sus scrofa)
- Tubulin, alpha (Complex from Bos taurus)
- Tubulin alpha chain (50 kDa, Protein from Bos taurus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Kinesin-like protein kif18a (42 kDa, Protein from Homo sapiens)
Molecular basis of human kinesin-8 function and inhibition
Resolution: 5.2 Å
EM Method: Helical reconstruction
Fitted PDBs: 5ocu
Q-score: 0.26
Locke J, Joseph AP, Pena A, Mockel MM, Mayer TU, Topf M, Moores CA
PNAS (2017) 114 pp. E9539-E9548 [ Pubmed: 29078367 DOI: doi:10.1073/pnas.1712169114 ]
- Zinc ion (65 Da, Ligand)
- Taxol (853 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Tubulin, beta (Complex from Sus scrofa)
- Kinesin-8 motor domain neck-linker (Complex from Homo sapiens)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Tubulin alpha chain (50 kDa, Protein from Bos taurus)
- Tubulin, alpha (Complex from Bos taurus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- 13-protofilament microtuble-bound human kinesin-8 motor domain neck-linker with amppnp (Complex)
- Kinesin-like protein kif18a (42 kDa, Protein from Homo sapiens)
Molecular basis of human kinesin-8 function and inhibition
Locke J, Joseph AP, Pena A, Mockel MM, Mayer TU, Topf M, Moores CA
PNAS (2017) 114 pp. E9539-E9548 [ Pubmed: 29078367 DOI: doi:10.1073/pnas.1712169114 ]
- Tubulin beta chain (Complex from sus scrofa)
- Taxol (853 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 4-chloranyl-2-nitro-1-(phenylsulfonyl)benzene (297 Da, Ligand)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 13-protofilament microtuble-bound human kinesin-8 motor domain neck-linker with its specific inhibitor btb-1 (Complex)
- Kinesin-8 motor domain neck-linker (Complex from Homo sapiens)
- Tubulin alpha chain (Complex from Bos taurus)
- Tubulin alpha chain (50 kDa, Protein from Bos taurus)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Tubulin beta chain (49 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Kinesin-like protein kif18a (42 kDa, Protein from Homo sapiens)
MamK double helical filament at 3.6 A resolution
Resolution: 3.64 Å
EM Method: Helical reconstruction
Fitted PDBs: 5ljv
Q-score: 0.467
Lowe J, He S, Scheres SH, Savva CG
PNAS (2016) 113 pp. 13396-13401 [ DOI: doi:10.1073/pnas.1612034113 Pubmed: 27821762 ]
- Mamk (Complex from Magnetospirillum magneticum AMB-1)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Actin-like atpase (37 kDa, Protein from Magnetospirillum magneticum AMB-1)
Structural rearrangements in the phage head-to-tail interface during assembly and infection
Resolution: 7.6 Å
EM Method: Single-particle
Fitted PDBs: 5a20
Q-score: 0.097
Chaban Y, Lurz R, Brasiles S, Cornilleau C, Karreman M, Zinn-Justin S, Tavares P, Orlova EV
PNAS (2015) 112 pp. 7009-7014 [ Pubmed: 25991862 DOI: doi:10.1073/pnas.1504039112 ]
- Bacteriophage spp1 portal protein gp6 (57 kDa, Protein from Bacillus phage SPP1)
- Tail-to-head joining protein gp17 (15 kDa, Protein from Bacillus phage SPP1)
- Head completion protein gp16 (12 kDa, Protein from Bacillus phage SPP1)
- Bacteriophage spp1 head-to-tail interface (1 MDa, Sample)
- Major tail protein gp17.1 (19 kDa, Protein from Bacillus phage SPP1)
- Head completion protein gp15 (11 kDa, Protein from Bacillus phage SPP1)
Structure of bacteriophage SPP1 head-to-tail interface without DNA and tape measure protein
Resolution: 7.2 Å
EM Method: Single-particle
Fitted PDBs: 5a21
Q-score: 0.155
Chaban Y, Lurz R, Brasiles S, Cornilleau C, Karreman M, Zinn-Justin S, Tavares P, Orlova EV
PNAS (2015) 112 pp. 7009-7014 [ DOI: doi:10.1073/pnas.1504039112 Pubmed: 25991862 ]
- Bacteriophage spp1 portal protein gp6 (57 kDa, Protein from Bacillus phage SPP1)
- Bacteriophage spp1 head-to-tail interface (1 MDa, Sample)
- Head completion protein gp16 (12 kDa, Protein from Bacillus phage SPP1)
- Tail joining protein gp17 (15 kDa, Protein from Bacillus phage SPP1)
- Major tail protein gp17.1 (19 kDa, Protein from Bacillus phage SPP1)
- Head completion protein gp15 (11 kDa, Protein from Bacillus phage SPP1)