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Localised reconstruction of alpha v beta 6 bound to Foot and Mouth Disease Virus O PanAsia - Pose A.
Resolution: 10.8 Å
EM Method: Single-particle
Fitted PDBs: 5nem
Q-score: 0.085
Kotecha A, Wang Q, Dong X, Ilca SL, Ondiviela M, Zihe R, Seago J, Charleston B, Fry EE, Abrescia NGA, Springer TA, Huiskonen JT, Stuart DI
Nat Commun (2017) 8 pp. 15408-15408 [ DOI: doi:10.1038/ncomms15408 Pubmed: 28534487 ]
- Foot-and-mouth disease virus (Complex from Foot-and-mouth disease virus)
- O panasia vp4 (7 kDa, Protein from Foot-and-mouth disease virus - type O)
- O panasia vp3 (23 kDa, Protein from Foot-and-mouth disease virus - type O)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Integrin beta-6 (51 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
- Integrin alpha-v (64 kDa, Protein from Homo sapiens)
- Integrin (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- O panasia vp1 (23 kDa, Protein from Foot-and-mouth disease virus - type O)
- Foot and mouth virus and integrin (9 MDa, Virus)
- O panasia vp2 (23 kDa, Protein from Foot-and-mouth disease virus - type O)
Resolution: 11.5 Å
EM Method: Single-particle
Fitted PDBs: 5ner
Q-score: 0.06
Kotecha A, Wang Q, Dong X, Ilca SL, Ondiviela M, Zihe R, Seago J, Charleston B, Fry EE, Abrescia NGA, Springer TA, Huiskonen JT, Stuart DI
Nat Commun (2017) 8 pp. 15408-15408 [ DOI: doi:10.1038/ncomms15408 Pubmed: 28534487 ]
- Foot-and-mouth disease virus (Complex from Foot-and-mouth disease virus)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Integrin beta-6 (51 kDa, Protein from Homo sapiens)
- O panasia vp2 (23 kDa, Protein from Foot-and-mouth disease virus)
- Calcium ion (40 Da, Ligand)
- O panasia vp1 (23 kDa, Protein from Foot-and-mouth disease virus)
- Integrin alpha-v (65 kDa, Protein from Homo sapiens)
- O panasia vp4 (7 kDa, Protein from Foot-and-mouth disease virus)
- Integrin (Complex from Homo sapiens)
- O panasia vp3 (23 kDa, Protein from Foot-and-mouth disease virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Foot and mouth virus and integrin (9 MDa, Virus)
Resolution: 8.6 Å
EM Method: Single-particle
Fitted PDBs: 5net
Q-score: 0.07
Kotecha A, Wang Q, Dong X, Ilca SL, Ondiviela M, Zihe R, Seago J, Charleston B, Fry EE, Abrescia NGA, Springer TA, Huiskonen JT, Stuart DI
Nat Commun (2017) 8 pp. 15408-15408 [ DOI: doi:10.1038/ncomms15408 Pubmed: 28534487 ]
- Alpha-d-mannopyranose (180 Da, Ligand)
- Integrin beta-6 (51 kDa, Protein from Homo sapiens)
- O1 manisa vp2 (24 kDa, Protein from Foot-and-mouth disease virus)
- Calcium ion (40 Da, Ligand)
- Foot-and-mouth disease virus (Virus from Foot-and-mouth disease virus)
- Integrin (Complex from Homo sapiens)
- Integrin alpha-v (65 kDa, Protein from Homo sapiens)
- Foot and mouth virus and integrin (9 MDa, Complex)
- O1 manisa vp3 (23 kDa, Protein from Foot-and-mouth disease virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- O1 manisa vp4 (8 kDa, Protein from Foot-and-mouth disease virus)
- O1 manisa vp1 (22 kDa, Protein from Foot-and-mouth disease virus)
Localized reconstruction of bacteriophage phi6 packaging hexamer P4
Resolution: 9.1 Å
EM Method: Single-particle
Fitted PDBs: 5muv
Q-score: 0.09
Sun Z, El Omari K, Sun X, Ilca SL, Kotecha A, Stuart DI, Poranen MM, Huiskonen JT
Nat Commun (2017) 8 pp. 14814-14814 [ Pubmed: 28287099 DOI: doi:10.1038/ncomms14814 ]
- Packaging enzyme p4 (32 kDa, Protein from Pseudomonas phage phi6)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Pseudomonas phage phi6 (Virus from Pseudomonas phage phi6)
- Calcium ion (40 Da, Ligand)
Localized reconstruction of bacteriophage phi6 vertex
Resolution: 9.1 Å
EM Method: Single-particle
Fitted PDBs: 5muw
Q-score: 0.068
Sun Z, El Omari K, Sun X, Ilca SL, Kotecha A, Stuart DI, Poranen MM, Huiskonen JT
Nat Commun (2017) 8 pp. 14814-14814 [ Pubmed: 28287099 DOI: doi:10.1038/ncomms14814 ]
- Packaging enzyme p4 (32 kDa, Protein from Pseudomonas phage phi6)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Pseudomonas phage phi6 (Virus from Pseudomonas phage phi6)
- Calcium ion (40 Da, Ligand)
Sub-tomogram averaging of Tula virus glycoprotein spike
Li S, Rissanen I, Zeltina A, Hepojoki J, Raghwani J, Harlos K, Pybus OG, Huiskonen JT, Bowden TA
Cell Rep (2016) 15 pp. 959-967 [ DOI: doi:10.1016/j.celrep.2016.03.082 Pubmed: 27117403 ]
Resolution: 7.9 Å
EM Method: Single-particle
Fitted PDBs: 5fj7
Q-score: 0.098
Ilca SL, Kotecha A, Sun X, Poranen MP, Stuart DI, Huiskonen JT
Nat Commun (2015) 6 pp. 8843- [ DOI: doi:10.1038/ncomms9843 Pubmed: 26534841 ]
- P1 protein from bacteriophage phi6 (85 kDa, Protein from Pseudomonas phage phi6)
- P4 protein from bacteriophage phi6 (35 kDa, Protein from Pseudomonas phage phi6)
- P2 protein from bacteriophage phi6 (75 kDa, Protein from Pseudomonas phage phi6)
- Bacteriophage phi6 polymerase complex assembled in vitro from purified proteins p1, p2, and p4 (Sample)