Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.
Isolated S3D-cofilin bound to an actin filament
Resolution: 7.5 Å
EM Method: Single-particle
Fitted PDBs: 6uc0
Q-score: 0.148
Huehn AR, Bibeau JP, Schramm AC, Cao W, De La Cruz EM, Sindelar CV
PNAS (2020) 117 pp. 1478-1484 [ Pubmed: 31900364 DOI: doi:10.1073/pnas.1915987117 ]
- Human s3d-cofilin-1 (Complex from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Rabbit skeletal actin (Complex from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Actin, alpha skeletal muscle (42 kDa, Protein from Oryctolagus cuniculus)
- Cofilin-1 (18 kDa, Protein from Homo sapiens)
- Complex of isolated human s3d-cofilin-1 bound to rabbit skeletal actin filaments (Complex)
Infectious exosomes from poliovirus-infected HeLa cells
Yang JE, Rossignol ED, Chang D, Zaia J, Forrester I, Raja K, Winbigler H, Nicastro D, Jackson WT, Bullitt E
Sci Rep (2020) 10 pp. 7939-7939 [ DOI: doi:10.1038/s41598-020-64531-1 Pubmed: 32409751 ]
Structural model of 53BP1 bound to a ubiquitylated and methylated nucleosome, at 4.5 A resolution
Resolution: 4.54 Å
EM Method: Single-particle
Fitted PDBs: 5kgf
Q-score: 0.301
Wilson MD, Benlekbir S, Fradet-Turcotte A, Sherker A, Julien JP, McEwan A, Noordermeer SM, Sicheri F, Rubinstein JL, Durocher D
Nature (2016) 536 pp. 100-103 [ Pubmed: 27462807 DOI: doi:10.1038/nature18951 ]
- Ubiquitylated methylated histone octamer (138 kDa, Complex from unclassified)
- Histone h3 (Complex from Xenopus laevis)
- Histone h2a type 1 (14 kDa, Protein from Homo sapiens)
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Ncp-ubme/gst-53bp1 complex (318 kDa, Complex)
- Histone h2a.1 k13rk36r (Complex from Homo sapiens)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Dna (145-mer) (44 kDa, DNA from synthetic construct)
- Ncp-ubme (226 kDa, Complex from unclassified)
- Ubiquitin (Complex from Homo sapiens)
- Widom-601 dna (882 kDa, Complex from synthetic construct)
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- Histone h2b.1 (Complex from Homo sapiens)
- Tumor suppressor p53-binding protein 1 (2 kDa, Protein from Homo sapiens)
- Histone h2b type 1-c/e/f/g/i (13 kDa, Protein from Homo sapiens)
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Gst-53bp1 (89 kDa, Complex from Homo sapiens)
- Histone h4kc20me2 (Complex from Xenopus laevis)
Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ Pubmed: 24336220 DOI: doi:10.1038/nsmb.2736 ]
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna08 (350 kDa, Sample)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rna08 (2 kDa, RNA from synthetic construct)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ Pubmed: 24336220 DOI: doi:10.1038/nsmb.2736 ]
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rna10 (2 kDa, RNA from synthetic construct)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna10 (350 kDa, Sample)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ Pubmed: 24336220 DOI: doi:10.1038/nsmb.2736 ]
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna12 (350 kDa, Sample)
- Rna12 (3 kDa, RNA from synthetic construct)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rna14 (3 kDa, RNA from synthetic construct)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna14 (350 kDa, Sample)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rna16 (4 kDa, RNA from synthetic construct)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna16 (350 kDa, Sample)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna24 (350 kDa, Sample)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rna24 (7 kDa, RNA from synthetic construct)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Rna36 (10 kDa, RNA from synthetic construct)
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna36 (350 kDa, Sample)