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CryoEM Structure INO80core Hexasome complex composite map state1
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8oo7
Q-score: 0.556
Zhang M, Jungblut A, Kunert F, Hauptmann L, Hoffmann T, Kolesnikova O, Metzner F, Moldt M, Weis F, DiMaio F, Hopfner KP, Eustermann S
Science (2023) 381 pp. 313-319 [ Pubmed: 37384673 DOI: doi:10.1126/science.adf6287 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ino80 core module in complex with hexasome (861 kDa, Complex)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Histone h2b (13 kDa, Protein from Homo sapiens)
- Dna strand 1 (69 kDa, DNA from synthetic construct)
- Dna (Complex from Synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna strand 2 (70 kDa, DNA from synthetic construct)
- Tetrafluoroaluminate ion (102 Da, Ligand)
- Actin-related protein 5 (87 kDa, Protein from Thermochaetoides thermophila)
- Ruvb-like protein 1 (50 kDa, Protein from Thermochaetoides thermophila)
- Chromatin remodeler ino80 (Complex from Thermochaetoides thermophila)
- Chromatin-remodeling complex subunit ies6 (23 kDa, Protein from Thermochaetoides thermophila)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chromatin-remodeling atpase ino80 (130 kDa, Protein from Thermochaetoides thermophila)
- Ino eighty subunit 2 (53 kDa, Protein from Thermochaetoides thermophila)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Ruvb-like protein 2 (53 kDa, Protein from Thermochaetoides thermophila)
- Magnesium ion (24 Da, Ligand)
- Histones (Complex from Homo sapiens)
INO80 core bound to hexasome composite map of state 2
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8oop
Q-score: 0.554
Zhang M, Jungblut A, Kunert F, Hauptmann L, Hoffmann T, Kolesnikova O, Metzner F, Moldt M, Weis F, DiMaio F, Hopfner KP, Eustermann S
Science (2023) 381 pp. 313-319 [ Pubmed: 37384673 DOI: doi:10.1126/science.adf6287 ]
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ino80 core module in complex with hexasome (861 kDa, Complex)
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Dna strand 1 (69 kDa, DNA from synthetic construct)
- Histone h2b (13 kDa, Protein from Homo sapiens)
- Dna (Complex from Synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna strand 2 (70 kDa, DNA from synthetic construct)
- Tetrafluoroaluminate ion (102 Da, Ligand)
- Actin-related protein 5 (87 kDa, Protein from Thermochaetoides thermophila)
- Ruvb-like protein 1 (50 kDa, Protein from Thermochaetoides thermophila)
- Chromatin remodeler ino80 (Complex from Thermochaetoides thermophila)
- Chromatin-remodeling complex subunit ies6 (23 kDa, Protein from Thermochaetoides thermophila)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Chromatin-remodeling atpase ino80 (130 kDa, Protein from Thermochaetoides thermophila)
- Ino eighty subunit 2 (53 kDa, Protein from Thermochaetoides thermophila)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Ruvb-like protein 2 (53 kDa, Protein from Thermochaetoides thermophila)
- Magnesium ion (24 Da, Ligand)
- Histones (Complex from Homo sapiens)
CryoEM Structure INO80core Hexasome complex ATPase-hexasome refinement state 2
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8oos
Q-score: 0.494
Zhang M, Jungblut A, Kunert F, Hauptmann L, Hoffmann T, Kolesnikova O, Metzner F, Moldt M, Weis F, DiMaio F, Hopfner KP, Eustermann S
Science (2023) 381 pp. 313-319 [ Pubmed: 37384673 DOI: doi:10.1126/science.adf6287 ]
- Histone h2a (14 kDa, Protein from Homo sapiens)
- Dna strand 1 (69 kDa, DNA from synthetic construct)
- Histone h2b (13 kDa, Protein from Homo sapiens)
- Ino80 (Complex from Thermochaetoides thermophila)
- Chromatin-remodeling atpase ino80 (130 kDa, Protein from Thermochaetoides thermophila)
- Dna (Complex from Synthetic construct)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Tetrafluoroaluminate ion (102 Da, Ligand)
- Dna strand 2 (70 kDa, DNA from synthetic construct)
- Magnesium ion (24 Da, Ligand)
- Histones (Complex from Homo sapiens)
- Ino80 core module in complex with hexasome (861 kDa, Complex)
Structure of human p97 ATPase L464P mutant
Resolution: 4.86 Å
EM Method: Single-particle
Fitted PDBs: 7mdm
Q-score: 0.184
Zhang X, Gui L, Li S, Nandi P, Columbres RC, Wong DE, Moen DR, Lin HJ, Chiu PL, Chou TF
Biochem J (2021) 478 pp. 3185-3204 [ DOI: doi:10.1042/BCJ20210288 Pubmed: 34405853 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Human p97 l464p mutant (536 kDa, Complex from Homo sapiens)
- Transitional endoplasmic reticulum atpase (89 kDa, Protein from Homo sapiens)
Structure of human p97 ATPase L464P mutant
Resolution: 4.12 Å
EM Method: Single-particle
Fitted PDBs: 7mdo
Q-score: 0.277
Zhang X, Gui L, Li S, Nandi P, Columbres RC, Wong DE, Moen DR, Lin HJ, Chiu PL, Chou TF
Biochem J (2021) 478 pp. 3185-3204 [ DOI: doi:10.1042/BCJ20210288 Pubmed: 34405853 ]
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Human p97 l464p mutant (536 kDa, Complex from Homo sapiens)
- Transitional endoplasmic reticulum atpase (89 kDa, Protein from Homo sapiens)