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Nodavirus RNA replication proto-crown, detergent-solubliized C12 multimer
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8fm9
Q-score: 0.334
Zhan H, Unchwaniwala N, Rebolledo-Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon JA, Grant T, Ahlquist P
PNAS (2023) 120 pp. e2217412120-e2217412120 [ Pubmed: 36693094 DOI: doi:10.1073/pnas.2217412120 ]
Nodavirus RNA replication proto-crown, detergent-solubliized C11 multimer
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8fma
Q-score: 0.424
Zhan H, Unchwaniwala N, Rebolledo-Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon JA, Grant T, Ahlquist P
PNAS (2023) 120 pp. e2217412120-e2217412120 [ Pubmed: 36693094 DOI: doi:10.1073/pnas.2217412120 ]
Nodavirus RNA replication protein A polymerase domain, local refinement
Resolution: 6.3 Å
EM Method: Single-particle
Fitted PDBs: 8fmb
Q-score: 0.344
Zhan H, Unchwaniwala N, Rebolledo-Viveros A, Pennington J, Horswill M, Broadberry R, Myers J, den Boon JA, Grant T, Ahlquist P
PNAS (2023) 120 pp. e2217412120-e2217412120 [ Pubmed: 36693094 DOI: doi:10.1073/pnas.2217412120 ]
Cryo-EM Structure of the PR-RT components of the HIV-1 Pol Polyprotein
Resolution: 8.2 Å
EM Method: Single-particle
Fitted PDBs: 7sjx
Q-score: 0.188
Harrison JJEK, Passos DO, Bruhn JF, Bauman JD, Tuberty L, DeStefano JJ, Ruiz FX, Lyumkis D, Arnold E
Sci Adv (2022) 8 pp. eabn9874-eabn9874 [ DOI: doi:10.1126/sciadv.abn9874 Pubmed: 35857464 ]
Resolution: 4.35 Å
EM Method: Single-particle
Fitted PDBs: 6pb4
Q-score: 0.224
Shi W, Jiang Y, Deng Y, Dong Z, Liu B
PLoS Biol (2020) 18 pp. e3000706- [ DOI: doi:10.1371/journal.pbio.3000706 ]
- The e. coli class-ii cap-dependent transcription activation complex with de novo rna transcript at the state 2 (550 kDa, Complex from Escherichia coli)
- Dna/rna (Complex)
- Dna-directed rna polymerase subunit alpha, dna-directed rna polymerase subunit beta, dna-directed rna polymerase subunit beta', dna-directed rna polymerase subunit omega, rna polymerase sigma factor rpod, camp-activated global transcriptional regulator crp (Complex from Escherichia coli)
- Nascent rna (1 kDa, RNA from Escherichia coli)
- Rna polymerase sigma factor rpod (72 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Camp-activated global transcriptional regulator crp (23 kDa, Protein from Escherichia coli)
- Synthetic template strand dna (78-mer) (24 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Adenosine-3',5'-cyclic-monophosphate (329 Da, Ligand)
- Synthetic nontemplate strand dna (78-mer) (23 kDa, DNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6oj3
Q-score: 0.3
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ Pubmed: 31233764 DOI: doi:10.1016/j.jmb.2019.06.016 ]
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6oj4
Q-score: 0.508
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ Pubmed: 31233764 DOI: doi:10.1016/j.jmb.2019.06.016 ]
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (TLP_RNA)
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6oj5
Q-score: 0.076
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ Pubmed: 31233764 DOI: doi:10.1016/j.jmb.2019.06.016 ]
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
In situ structure of rotavirus VP1 RNA-dependent RNA polymerase (DLP_RNA)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6oj6
Q-score: 0.349
Jenni S, Salgado EN, Herrmann T, Li Z, Grant T, Grigorieff N, Trapani S, Estrozi LF, Harrison SC
J Mol Biol (2019) 431 pp. 3124-3138 [ Pubmed: 31233764 DOI: doi:10.1016/j.jmb.2019.06.016 ]
- Template (4 kDa, RNA from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rotavirus a (strain rva/monkey/united states/rrv/1975/g3p5b[3]) (Virus from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Transcript (3 kDa, RNA from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Rna-directed rna polymerase (125 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))
- Inner capsid protein vp2 (103 kDa, Protein from Rotavirus A (strain RVA/Monkey/United States/RRV/1975/G3P5B[3]))