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Structure of the SARS-CoV-2 spike glycoprotein in complex with the 87G7 antibody Fab fragment
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7r40
Q-score: 0.333
Du W, Hurdiss DL, Drabek D, Mykytyn AZ, Kaiser FK, Gonzalez-Hernandez M, Munoz-Santos D, Lamers MM, van Haperen R, Li W, Drulyte I, Wang C, Sola I, Armando F, Beythien G, Ciurkiewicz M, Baumgartner W, Guilfoyle K, Smits T, van der Lee J, van Kuppeveld FJM, van Amerongen G, Haagmans BL, Enjuanes L, Osterhaus ADME, Grosveld F, Bosch BJ
Sci Immunol (2022) 7 pp. eabp9312-eabp9312 [ DOI: doi:10.1126/sciimmunol.abp9312 Pubmed: 35471062 ]
- 87g7 heavy chain variable region (23 kDa, Protein from Homo sapiens)
- 87g7 light chain variable region (23 kDa, Protein from Homo sapiens)
- Sars-cov-2 spike glycoprotein in complex with the 87g7 antibody fab fragment (500 kDa, Complex)
- Spike glycoprotein (141 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 87g7 antibody fab fragment (Complex from Homo sapiens)
- Sars-cov-2 spike glycoprotein (Complex from Severe acute respiratory syndrome coronavirus 2)
Resolution: 2.76 Å
EM Method: Single-particle
Fitted PDBs: 6cv1
Q-score: 0.619
Baggen J, Liu Y, Lyoo H, van Vliet ALW, Wahedi M, de Bruin JW, Roberts RW, Overduin P, Meijer A, Rossmann MG, Thibaut HJ, van Kuppeveld FJM
Nat Commun (2019) 10 pp. 3171-3171 [ DOI: doi:10.1038/s41467-019-11256-z Pubmed: 31320648 ]
- Viral protein 2 (27 kDa, Protein from Enterovirus D68)
- Viral protein 3 (27 kDa, Protein from Enterovirus D68)
- Viral protein 1 (32 kDa, Protein from Enterovirus D68)
- Viral protein 4 (7 kDa, Protein from Enterovirus D68)
- Water (18 Da, Ligand)
- Enterovirus d68 (Virus from Enterovirus D68)
CryoEM structure of human enterovirus D68 full virion
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 6cv2
Q-score: 0.608
Baggen J, Liu Y, Lyoo H, van Vliet ALW, Wahedi M, de Bruin JW, Roberts RW, Overduin P, Meijer A, Rossmann MG, Thibaut HJ, van Kuppeveld FJM
Nat Commun (2019) 10 pp. 3171-3171 [ DOI: doi:10.1038/s41467-019-11256-z Pubmed: 31320648 ]
- Viral protein 2 (27 kDa, Protein from Enterovirus D68)
- Viral protein 3 (27 kDa, Protein from Enterovirus D68)
- Viral protein 1 (32 kDa, Protein from Enterovirus D68)
- Viral protein 4 (7 kDa, Protein from Enterovirus D68)
- Enterovirus d68 (Virus from Enterovirus D68)
Resolution: 2.79 Å
EM Method: Single-particle
Fitted PDBs: 6cv5
Q-score: 0.622
Baggen J, Liu Y, Lyoo H, van Vliet ALW, Wahedi M, de Bruin JW, Roberts RW, Overduin P, Meijer A, Rossmann MG, Thibaut HJ, van Kuppeveld FJM
Nat Commun (2019) 10 pp. 3171-3171 [ DOI: doi:10.1038/s41467-019-11256-z Pubmed: 31320648 ]
- Viral protein 2 (27 kDa, Protein from Enterovirus D68)
- Viral protein 3 (27 kDa, Protein from Enterovirus D68)
- Viral protein 1 (32 kDa, Protein from Enterovirus D68)
- Viral protein 4 (7 kDa, Protein from Enterovirus D68)
- Water (18 Da, Ligand)
- Enterovirus d68 (Virus from Enterovirus D68)
CryoEM structure of human enterovirus D68 in complex with 6'-sialyl-N-acetyllactosamine
Resolution: 2.43 Å
EM Method: Single-particle
Fitted PDBs: 6cvb
Q-score: 0.678
Baggen J, Liu Y, Lyoo H, van Vliet ALW, Wahedi M, de Bruin JW, Roberts RW, Overduin P, Meijer A, Rossmann MG, Thibaut HJ, van Kuppeveld FJM
Nat Commun (2019) 10 pp. 3171-3171 [ DOI: doi:10.1038/s41467-019-11256-z Pubmed: 31320648 ]
- Viral protein 2 (27 kDa, Protein from Enterovirus D68)
- Viral protein 3 (27 kDa, Protein from Enterovirus D68)
- Viral protein 1 (32 kDa, Protein from Enterovirus D68)
- Viral protein 4 (7 kDa, Protein from Enterovirus D68)
- Water (18 Da, Ligand)
- Enterovirus d68 (Virus from Enterovirus D68)
CryoEM structure of human enterovirus D68 A-particle (pH 5.5 and 33 degrees Celsius)
Resolution: 2.73 Å
EM Method: Single-particle
Fitted PDBs: 6cs4
Q-score: 0.611
Liu Y, Sheng J, van Vliet ALW, Buda G, van Kuppeveld FJM, Rossmann MG
PNAS (2018) 115 pp. E12209-E12217 [ DOI: doi:10.1073/pnas.1803347115 Pubmed: 30530701 ]
- Viral protein 2 (27 kDa, Protein from enterovirus D68)
- Viral protein 3 (27 kDa, Protein from enterovirus D68)
- Water (18 Da, Ligand)
- Viral protein 1 (32 kDa, Protein from Enterovirus D68)
- Enterovirus d68 (Virus from Enterovirus D68)
CryoEM structure of human enterovirus D68 full native virion
Resolution: 2.17 Å
EM Method: Single-particle
Fitted PDBs: 6csg
Q-score: 0.734
Liu Y, Sheng J, van Vliet ALW, Buda G, van Kuppeveld FJM, Rossmann MG
PNAS (2018) 115 pp. E12209-E12217 [ DOI: doi:10.1073/pnas.1803347115 Pubmed: 30530701 ]
- Viral protein 4 (7 kDa, Protein from Enterovirus D68)
- Viral protein 3 (27 kDa, Protein from Enterovirus D68)
- Water (18 Da, Ligand)
- Viral protein 1 (32 kDa, Protein from Enterovirus D68)
- Viral protein 2 (27 kDa, Protein from Enterovirus D68)
- Enterovirus d68 (Virus from Enterovirus D68)
CryoEM structure of human enterovirus D68 emptied particle (pH 5.5 and 33 degrees Celsius)
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6csh
Q-score: 0.576
Liu Y, Sheng J, van Vliet ALW, Buda G, van Kuppeveld FJM, Rossmann MG
PNAS (2018) 115 pp. E12209-E12217 [ DOI: doi:10.1073/pnas.1803347115 Pubmed: 30530701 ]
- Viral protein 2 (27 kDa, Protein from Enterovirus D68)
- Viral protein 3 (27 kDa, Protein from Enterovirus D68)
- Viral protein 1 (32 kDa, Protein from Enterovirus D68)
- Enterovirus d68 (Virus from Enterovirus D68)