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Local CryoEM structure of the SARS-CoV-2 S6P in complex with 7B3 Fab
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8i3s
Q-score: 0.4
Liu Q, Zhao H, Li Z, Zhang Z, Huang R, Gu M, Zhuang K, Xiong Q, Chen X, Yu W, Qian S, Zhang Y, Tan X, Zhang M, Yu F, Guo M, Huang Z, Wang X, Xiang W, Wu B, Mei F, Cai K, Zhou L, Zhou L, Wu Y, Yan H, Cao S, Lan K, Chen Y
Signal Transduct Target Ther (2023) 8 pp. 347-347 [ Pubmed: 37704615 DOI: doi:10.1038/s41392-023-01615-0 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of fab 7b3 (23 kDa, Protein from Homo sapiens)
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Spike-fab complex (Complex from Homo sapiens)
- Heavy chain od fab 7b3 (24 kDa, Protein from Homo sapiens)
Local CryoEM structure of the SARS-CoV-2 S6P in complex with 14B1 Fab
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8i3u
Q-score: 0.462
Liu Q, Zhao H, Li Z, Zhang Z, Huang R, Gu M, Zhuang K, Xiong Q, Chen X, Yu W, Qian S, Zhang Y, Tan X, Zhang M, Yu F, Guo M, Huang Z, Wang X, Xiang W, Wu B, Mei F, Cai K, Zhou L, Zhou L, Wu Y, Yan H, Cao S, Lan K, Chen Y
Signal Transduct Target Ther (2023) 8 pp. 347-347 [ Pubmed: 37704615 DOI: doi:10.1038/s41392-023-01615-0 ]
- Heavy chain of fab 14b1 (16 kDa, Protein from Homo sapiens)
- Spike-fab complex (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of fab 14b1 (14 kDa, Protein from Homo sapiens)
- Spike glycoprotein (137 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of MPXV M2 in complex with human B7.1
Resolution: 3.04 Å
EM Method: Single-particle
Fitted PDBs: 8hxa
Q-score: 0.52
Yang S, Wang Y, Yu F, Cheng R, Zhang Y, Zhou D, Ren X, Deng Z, Zhao H
Nat Commun (2023) 14 pp. 5186-5186 [ Pubmed: 37626059 DOI: doi:10.1038/s41467-023-40748-2 ]
- T-lymphocyte activation antigen cd80 (22 kDa, Protein from Homo sapiens)
- Nfkb inhibitor (23 kDa, Protein from Monkeypox virus)
- M2-hb7.1 (Complex from Homo sapiens)
Cryo-EM structure of MPXV M2 hexamer in complex with human B7.2
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8hxb
Q-score: 0.516
Yang S, Wang Y, Yu F, Cheng R, Zhang Y, Zhou D, Ren X, Deng Z, Zhao H
Nat Commun (2023) 14 pp. 5186-5186 [ Pubmed: 37626059 DOI: doi:10.1038/s41467-023-40748-2 ]
- T-lymphocyte activation antigen cd86 (24 kDa, Protein from Homo sapiens)
- M2-hb7.2 (Complex from Homo sapiens)
- Nfkb inhibitor (23 kDa, Protein from Monkeypox virus)
Cryo-EM structure of MPXV M2 heptamer in complex with human B7.2
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8hxc
Q-score: 0.45
Yang S, Wang Y, Yu F, Cheng R, Zhang Y, Zhou D, Ren X, Deng Z, Zhao H
Nat Commun (2023) 14 pp. 5186-5186 [ Pubmed: 37626059 DOI: doi:10.1038/s41467-023-40748-2 ]
- T-lymphocyte activation antigen cd86 (24 kDa, Protein from Homo sapiens)
- M2-hb7.2 (Complex from Homo sapiens)
- Nfkb inhibitor (23 kDa, Protein from Monkeypox virus)
Cryo-EM structure of SbCas7-11 in complex with crRNA and target RNA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7x7a
Q-score: 0.523
Yu G, Wang X, Zhang Y, An Q, Wen Y, Li X, Yin H, Deng Z, Zhang H
Nat Microbiol (2022) 7 pp. 2078-2088 [ DOI: doi:10.1038/s41564-022-01256-z Pubmed: 36302881 ]
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Binary complex (Complex from Candidatus Scalindua brodae)
Cryo-EM structure of a bacterial protein
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7x7r
Q-score: 0.384
Yu G, Wang X, Zhang Y, An Q, Wen Y, Li X, Yin H, Deng Z, Zhang H
Nat Microbiol (2022) 7 pp. 2078-2088 [ DOI: doi:10.1038/s41564-022-01256-z Pubmed: 36302881 ]
- Rna (5'-r(p*ap*gp*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*g)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Binary complex (Complex from Candidatus Scalindua brodae)
Cryo-EM structure of a bacterial protein complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7x8a
Q-score: 0.545
Yu G, Wang X, Zhang Y, An Q, Wen Y, Li X, Yin H, Deng Z, Zhang H
Nat Microbiol (2022) 7 pp. 2078-2088 [ DOI: doi:10.1038/s41564-022-01256-z Pubmed: 36302881 ]
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Complex (Complex from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
Cryo-EM structure of a bacterial protein complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xc7
Q-score: 0.423
Yu G, Wang X, Zhang Y, An Q, Wen Y, Li X, Yin H, Deng Z, Zhang H
Nat Microbiol (2022) 7 pp. 2078-2088 [ DOI: doi:10.1038/s41564-022-01256-z Pubmed: 36302881 ]
- Quaternary complex (Complex from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Rna (46-mer) (14 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)