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Structural Basis of Co-translational Quality Control by ArfA and RF2 Bound to Ribosome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 5u4i
Q-score: 0.226
Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, Tajkhorshid E, Jin H
Nature (2017) 541 pp. 554-557 [ Pubmed: 28077875 DOI: doi:10.1038/nature21053 ]
- 50s ribosomal protein l11 (Cellular component from Escherichia coli)
- 50s ribosomal protein l15 (Cellular component from Escherichia coli)
- 5s rrna (38 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s16 (Cellular component from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli (strain K12))
- P-site or e-site fmet-trna(fmet) (Cellular component)
- 30s ribosomal protein s17 (Cellular component from Escherichia coli)
- 50s ribosomal protein l14 (Cellular component from Escherichia coli)
- 30s ribosomal protein s2 (Complex from Escherichia coli)
- Mrna (5 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (Cellular component from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (Cellular component from Escherichia coli)
- 50s ribosomal protein l34 (Cellular component from Escherichia coli)
- 30s ribosomal protein s20 (Cellular component from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (Cellular component from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (Cellular component from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (Cellular component from Escherichia coli)
- Alternative ribosome-rescue factor a (6 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (Cellular component from Escherichia coli)
- 30s ribosomal protein s7 (Cellular component from Escherichia coli)
- 16s rrna (497 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l25 (Complex from Escherichia coli)
- 50s ribosomal protein l17 (Cellular component from Escherichia coli)
- 50s ribosomal protein l32 (Cellular component from Escherichia coli)
- 50s ribosomal protein l6 (Cellular component from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (Cellular component from Escherichia coli)
- 50s ribosomal protein l16 (Cellular component from Escherichia coli)
- 30s ribosomal protein s18 (Cellular component from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (Cellular component from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (Cellular component from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (Cellular component from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (Cellular component from Escherichia coli)
- 50s ribosomal protein l13 (Cellular component from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (Cellular component from Escherichia coli)
- 50s ribosomal protein l19 (Cellular component from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s21 (Cellular component from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (Cellular component from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l18 (Cellular component from Escherichia coli)
- Peptide chain release factor 2 (43 kDa, Protein from Escherichia coli (strain K12))
- Mrna (Cellular component)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l24 (Cellular component from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (Cellular component from Escherichia coli)
- 30s ribosomal protein s5 (Cellular component from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l9 (Cellular component from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l4 (Cellular component from Escherichia coli)
- Peptide chain release factor 2 (40 MDa, Cellular component from Escherichia coli)
- 50s ribosomal protein l21 (Cellular component from Escherichia coli)
- Non-stop ribosomal complex with arfa and rf2 (Complex from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (Cellular component from Escherichia coli)
- 50s ribosomal protein l33 (Cellular component from Escherichia coli)
- 50s ribosomal protein l23 (Cellular component from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s14 (Cellular component from Escherichia coli)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (Cellular component from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (Cellular component from Escherichia coli)
- 23s rrna (Cellular component from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli (strain K12))
- 50s subunit (Complex)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (Cellular component from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli (strain K12))
- 5s rrna (Cellular component from Escherichia coli)
- 30s ribosomal protein s6 (Cellular component from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (Cellular component from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli (strain K12))
- Alternative ribosome-rescue factor a (6 MDa, Cellular component from Escherichia coli)
- 50s ribosomal protein l29 (Cellular component from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- P-site or e-site fmet-trna(fmet) (24 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- 16s rrna (Cellular component from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l27 (Cellular component from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s subunit (Complex)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
Structural Basis of Co-translational Quality Control by ArfA and RF2 Binding to Ribosome
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5u4j
Q-score: 0.402
Zeng F, Chen Y, Remis J, Shekhar M, Phillips JC, Tajkhorshid E, Jin H
Nature (2017) 541 pp. 554-557 [ Pubmed: 28077875 DOI: doi:10.1038/nature21053 ]
- Mrna (Cellular component)
- P-site trna fmet (24 kDa, RNA from Escherichia coli)
- 30s subunit (Complex from Escherichia coli)
- 16s rrna (497 kDa, RNA from Escherichia coli)
- 23s rrna (941 kDa, RNA from Escherichia coli)
- Alternative ribosome-rescue factor a (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (Cellular component from Escherichia coli)
- Peptide chain release factor 2 (Cellular component from Escherichia coli)
- Mrna (5 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s4 (Cellular component from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- Peptide chain release factor 2 (43 kDa, Protein from Escherichia coli)
- Non-stop ribosomal complex with arfa and rf2 (Complex from Escherichia coli)
- P-site trna fmet (Cellular component from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 16s rrna (Cellular component from Escherichia coli)
- Alternative ribosome-rescue factor a (Cellular component from Escherichia coli)
- 30s ribosomal protein s12 (Cellular component from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 23s rrna (Cellular component from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (Cellular component from Escherichia coli)
- 50s subunit (Complex from Escherichia coli)