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Resolution: 2.13 Å
EM Method: Single-particle
Fitted PDBs: 7jfo
Q-score: 0.734
He S, Chou HT, Matthies D, Wunder T, Meyer MT, Atkinson N, Martinez-Sanchez A, Jeffrey PD, Port SA, Patena W, He G, Chen VK, Hughson FM, McCormick AJ, Mueller-Cajar O, Engel BD, Yu Z, Jonikas MC
Nat Plants (2020) 6 pp. 1480-1490 [ DOI: doi:10.1038/s41477-020-00811-y Pubmed: 33230314 ]
- Ribulose bisphosphate carboxylase small chain 2, chloroplastic (20 kDa, Protein from Chlamydomonas reinhardtii)
- Epyc1(49-72) peptide-bound rubisco (Complex from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- Ribulose bisphosphate carboxylase large chain (52 kDa, Protein from Chlamydomonas reinhardtii)
- Lci5 (2 kDa, Protein from Chlamydomonas reinhardtii)
Resolution: 2.68 Å
EM Method: Single-particle
Fitted PDBs: 7jn4
Q-score: 0.624
He S, Chou HT, Matthies D, Wunder T, Meyer MT, Atkinson N, Martinez-Sanchez A, Jeffrey PD, Port SA, Patena W, He G, Chen VK, Hughson FM, McCormick AJ, Mueller-Cajar O, Engel BD, Yu Z, Jonikas MC
Nat Plants (2020) 6 pp. 1480-1490 [ DOI: doi:10.1038/s41477-020-00811-y Pubmed: 33230314 ]
- Rubisco at apo state (Complex from Chlamydomonas reinhardtii)
- Ribulose bisphosphate carboxylase small chain 2, chloroplastic (20 kDa, Protein from Chlamydomonas reinhardtii)
- Ribulose bisphosphate carboxylase large chain (52 kDa, Protein from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
EPYC1(106-135) peptide-bound Rubisco
Resolution: 2.06 Å
EM Method: Single-particle
Fitted PDBs: 7jsx
Q-score: 0.677
He S, Chou HT, Matthies D, Wunder T, Meyer MT, Atkinson N, Martinez-Sanchez A, Jeffrey PD, Port SA, Patena W, He G, Chen VK, Hughson FM, McCormick AJ, Mueller-Cajar O, Engel BD, Yu Z, Jonikas MC
Nat Plants (2020) 6 pp. 1480-1490 [ DOI: doi:10.1038/s41477-020-00811-y Pubmed: 33230314 ]
- Ribulose bisphosphate carboxylase small chain 2, chloroplastic (20 kDa, Protein from Chlamydomonas reinhardtii)
- Epyc1(106-135) peptide-bound rubisco (Complex from Chlamydomonas reinhardtii)
- Water (18 Da, Ligand)
- Ribulose bisphosphate carboxylase large chain (52 kDa, Protein from Chlamydomonas reinhardtii)
- Epyc1 (3 kDa, Protein from Chlamydomonas reinhardtii)
PmtCD peptide toxin ABC exporter in nucleotide free (apo) conformation
Zeytuni N, Dickey SW, Hu J, Chou HT, Worrall LJ, Alexander JAN, Carlson ML, Nosella M, Duong F, Yu Z, Otto M, Strynadka NCJ
Sci Adv (2020) 6 pp. eabb8219- [ DOI: doi:10.1126/sciadv.abb8219 Pubmed: 32998902 ]
- Pmtc (Protein from Staphylococcus aureus)
- Pmtd (Protein from Staphylococcus aureus)
- Pmtcd (120 kDa, Complex from Staphylococcus aureus)
Zeytuni N, Dickey SW, Hu J, Chou HT, Worrall LJ, Alexander JAN, Carlson ML, Nosella M, Duong F, Yu Z, Otto M, Strynadka NCJ
Sci Adv (2020) 6 pp. eabb8219- [ DOI: doi:10.1126/sciadv.abb8219 Pubmed: 32998902 ]
Resolution: 3.68 Å
EM Method: Single-particle
Fitted PDBs: 6d03
Q-score: 0.482
Gruszczyk J, Huang RK, Chan LJ, Menant S, Hong C, Murphy JM, Mok YF, Griffin MDW, Pearson RD, Wong W, Cowman AF, Yu Z, Tham WH
Nature (2018) 559 pp. 135-139 [ DOI: doi:10.1038/s41586-018-0249-1 Pubmed: 29950717 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Serotransferrin (77 kDa, Protein from Human)
- Reticulocyte binding protein 2, putative (96 kDa, Protein from Plasmodium vivax)
- Transferrin receptor protein 1 (73 kDa, Protein from Homo sapiens)
- Carbonate ion (60 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Ternary complex between human transferrin receptor 1, transferrin and plasmodium vivax reticulocyte-binding protein 2b (Complex from homo sapiens)
- Calcium ion (40 Da, Ligand)
Resolution: 3.74 Å
EM Method: Single-particle
Fitted PDBs: 6d04
Q-score: 0.444
Gruszczyk J, Huang RK, Chan LJ, Menant S, Hong C, Murphy JM, Mok YF, Griffin MDW, Pearson RD, Wong W, Cowman AF, Yu Z, Tham WH
Nature (2018) 559 pp. 135-139 [ DOI: doi:10.1038/s41586-018-0249-1 Pubmed: 29950717 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Serotransferrin (77 kDa, Protein from Human)
- Reticulocyte binding protein 2, putative (96 kDa, Protein from Plasmodium vivax)
- Transferrin receptor protein 1 (73 kDa, Protein from Homo sapiens)
- Ternary complex between human transferrin receptor 1, transferrin and plasmodium vivax reticulocyte-binding protein 2b (Complex from Homo sapiens)
- Carbonate ion (60 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Calcium ion (40 Da, Ligand)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6d05
Q-score: 0.419
Gruszczyk J, Huang RK, Chan LJ, Menant S, Hong C, Murphy JM, Mok YF, Griffin MDW, Pearson RD, Wong W, Cowman AF, Yu Z, Tham WH
Nature (2018) 559 pp. 135-139 [ DOI: doi:10.1038/s41586-018-0249-1 Pubmed: 29950717 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Serotransferrin (77 kDa, Protein from Human)
- Reticulocyte binding protein 2, putative (96 kDa, Protein from Plasmodium vivax)
- Transferrin receptor protein 1 (73 kDa, Protein from Homo sapiens)
- Carbonate ion (60 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Ternary complex between human transferrin receptor 1, transferrin and plasmodium vivax reticulocyte-binding protein 2b (Complex from homo sapiens)
- Calcium ion (40 Da, Ligand)
Focused map on the aCTD-CAP region of the class-I bacterial transcription activation complex
Worrall LJ, Hong C, Vuckovic M, Deng W, Bergeron JR, Majewski DD, Huang RK, Spreter T, Finlay BB, Yu Z, Strynadka NC
Nature (2016) 540 pp. 597-601 [ Pubmed: 27974800 DOI: doi:10.1038/nature20576 ]