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The original consensus map of PP7 binding to T4P from PAO1
Thongchol J, Yu Z, Harb L, Lin Y, Koch M, Theodore M, Narsaria U, Shaevitz J, Gitai Z, Wu Y, Zhang J, Zeng L
Science (2024) 384 pp. eadl0635-eadl0635 [ DOI: doi:10.1126/science.adl0635 Pubmed: 38574145 ]
- Type iv twitching pilus (240 kDa, Cellular component from Pseudomonas aeruginosa)
AP205 binding to one Acinetobacter GP16 type iv pilus
Meng R, Xing Z, Chang JY, Yu Z, Thongchol J, Xiao W, Wang Y, Chamakura K, Zeng Z, Wang F, Young R, Zeng L, Zhang J
Nat Commun (2024) 15 pp. 2746-2746 [ Pubmed: 38553443 DOI: doi:10.1038/s41467-024-47119-5 ]
- Acinetobacter phage ap205 (4 MDa, Virus from Acinetobacter phage AP205)
Cryo-EM structure of ATP13A2 in the putative of E2 state
Resolution: 4.87 Å
EM Method: Single-particle
Fitted PDBs: 8ier
Q-score: 0.162
Mu J, Xue C, Fu L, Yu Z, Nie M, Wu M, Chen X, Liu K, Bu R, Huang Y, Yang B, Han J, Jiang Q, Chan KC, Zhou R, Li H, Huang A, Wang Y, Liu Z
Nat Commun (2023) 14 pp. 1978-1978 [ DOI: doi:10.1038/s41467-023-37741-0 Pubmed: 37031211 ]
- Spermine (202 Da, Ligand)
- Cryo-em structure of atp13a2 in the putative of e2 state (Complex from Homo sapiens)
- Polyamine-transporting atpase 13a2 (128 kDa, Protein from Homo sapiens)
Composite cryo-EM density map of the dimeric human CAF1-H3-H4 complex
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 8iqf
Q-score: 0.298
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ Pubmed: 37616371 DOI: doi:10.1126/science.add8673 ]
- Chromatin assembly factor 1 subunit a (107 kDa, Protein from Homo sapiens)
- Chromatin assembly factor 1 subunit b (61 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Caf-1fl complex (Complex from Homo sapiens)
- H3-h4 (Complex)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dimeric caf1-h3-h4 complex (486 kDa, Complex from Homo sapiens)
Local refinement cryo-EM map of protomer I of the dimeric human CAF1-H3-H4 complex
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ Pubmed: 37616371 DOI: doi:10.1126/science.add8673 ]
- Dimeric caf1-h3-h4 complex (523 kDa, Complex from Homo sapiens)
- Caf-1 (Complex from Homo sapiens)
- H3-h4 (Complex)
Local refinement cryo-EM map of protomer II of the dimeric human CAF1-H3-H4 complex
Liu CP, Yu Z, Xiong J, Hu J, Song A, Ding D, Yu C, Yang N, Wang M, Yu J, Hou P, Zeng K, Li Z, Zhang Z, Zhang X, Li W, Zhang Z, Zhu B, Li G, Xu RM
Science (2023) 381 pp. eadd8673-eadd8673 [ Pubmed: 37616371 DOI: doi:10.1126/science.add8673 ]
- Dimeric caf1-h3-h4 complex (523 kDa, Complex from Homo sapiens)
- Caf-1 (Complex from Homo sapiens)
- H3-h4 (Complex)
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 7xk1
Q-score: 0.279
Yu Z, Wu Z, Li Y, Hao Q, Cao X, Blaha GM, Lin J, Lu G
Nucleic Acids Res (2023) 51 pp. 4000-4011 [ DOI: doi:10.1093/nar/gkad144 Pubmed: 36912079 ]
- Complex (Complex)
- Glycyl-trna synthetase (Complex from Oryza sativa subsp. japonica)
- Trna (Complex from Oryza sativa)
- Trna(gly) (23 kDa, RNA from Oryza sativa)
- Glycine--trna ligase (117 kDa, Protein from Oryza sativa Japonica Group)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 8h1c
Q-score: 0.236
Yu Z, Wu Z, Li Y, Hao Q, Cao X, Blaha GM, Lin J, Lu G
Nucleic Acids Res (2023) 51 pp. 4000-4011 [ DOI: doi:10.1093/nar/gkad144 Pubmed: 36912079 ]
- Glycine--trna ligase (117 kDa, Protein from Oryza sativa Japonica Group)
- Trna(gly) (74-mer) (23 kDa, RNA from Oryza sativa)
- Complex (Complex from Oryza sativa Japonica Group)
The nucleosome-bound human PBAF complex
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7y8r
Q-score: 0.172
Wang L, Yu J, Yu Z, Wang Q, Li W, Ren Y, Chen Z, He S, Xu Y
Nat Commun (2022) 13 pp. 7644-7644 [ Pubmed: 36496390 DOI: doi:10.1038/s41467-022-34859-5 ]
- Transcription activator brg1 (184 kDa, Protein from Homo sapiens)
- Unkown (1 kDa, Protein from Homo sapiens)
- Beryllium trifluoride ion (66 Da, Ligand)
- Unknown (2 kDa, Protein from Homo sapiens)
- At-rich interactive domain-containing protein 2 (197 kDa, Protein from Homo sapiens)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily e member 1 (46 kDa, Protein from Homo sapiens)
- Histone h2b (13 kDa, Protein from Homo sapiens)
- Unknown (2 kDa, Protein from Homo sapiens)
- Swi/snf complex subunit smarcc2 (133 kDa, Protein from Homo sapiens)
- Unknown (1 kDa, Protein from Homo sapiens)
- Nucleosome-bound human pbaf complex (Complex from Homo sapiens)
- Dna (213-mer) (65 kDa, DNA from Homo sapiens)
- Protein polybromo-1 (184 kDa, Protein from Homo sapiens)
- Actin-like protein 6a (47 kDa, Protein from Homo sapiens)
- Actb protein (fragment) (41 kDa, Protein from Homo sapiens)
- Phd finger protein 10 (56 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily b member 1 (44 kDa, Protein from Homo sapiens)
- Histone h3 (15 kDa, Protein from Homo sapiens)
- Swi/snf-related matrix-associated actin-dependent regulator of chromatin subfamily d member 1 (58 kDa, Protein from Homo sapiens)
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Unknown (8 kDa, Protein from Homo sapiens)
- Dna (213-mer) (65 kDa, DNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Bromodomain-containing protein 7 (74 kDa, Protein from Homo sapiens)
- Histone h2a type 1-c (14 kDa, Protein from Homo sapiens)