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Cryo-EM structure of Bimetallic dodecameric cage design 3 (BMC3) from cytochrome cb562
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 6ovh
Q-score: 0.631
Golub E, Subramanian RH, Esselborn J, Alberstein RG, Bailey JB, Chiong JA, Yan X, Booth T, Baker TS, Tezcan FA
Nature (2020) 578 pp. 172-176 [ Pubmed: 31969701 DOI: doi:10.1038/s41586-019-1928-2 ]
- Bimetallic dodecameric cage 3 (bmc3) (150 kDa, Complex from Escherichia coli)
- Acetohydroxamic acid (75 Da, Ligand)
- Heme c (618 Da, Ligand)
- Soluble cytochrome b562 (11 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Zinc ion (65 Da, Ligand)
Structure of a group II intron retroelement prior to DNA integration
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6me0
Q-score: 0.407
Haack DB, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N
Cell (2019) 178 pp. 612-623.e12 [ DOI: doi:10.1016/j.cell.2019.06.035 Pubmed: 31348888 ]
- T.el4h group ii intron retroelement (Complex from Thermosynechococcus elongatus)
- Sense target dna (14 kDa, DNA from Thermosynechococcus elongatus)
- Sodium ion (22 Da, Ligand)
- Maturase reverse transcriptase (65 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Magnesium ion (24 Da, Ligand)
- T.el4h rna (280 kDa, RNA from Thermosynechococcus elongatus)
Structure of a group II intron retroelement after DNA integration
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6mec
Q-score: 0.415
Haack DB, Yan X, Zhang C, Hingey J, Lyumkis D, Baker TS, Toor N
Cell (2019) 178 pp. 612-623.e12 [ DOI: doi:10.1016/j.cell.2019.06.035 Pubmed: 31348888 ]
- T.el4h group ii intron retroelement (Complex from Thermosynechococcus elongatus)
- Sense target dna (14 kDa, DNA from Thermosynechococcus elongatus)
- T.el4h rna (280 kDa, Macromolecule from Thermosynechococcus elongatus)
- Sodium ion (22 Da, Ligand)
- Maturase reverse transcriptase (65 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Magnesium ion (24 Da, Ligand)
The structure of CVA10 virus mature virion
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acu
Q-score: 0.086
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Zhou ZH, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp4 (7 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Sphingosine (299 Da, Ligand)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
The structure of CVA10 virus procapsid particle
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6acw
Q-score: 0.476
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp0 (35 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
The structure of CVA10 virus A-particle
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6acy
Q-score: 0.543
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
The structure of CVA10 virus A-particle from its complex with Fab 2G8
Resolution: 4.3 Å
EM Method: Single-particle
Fitted PDBs: 6acz
Q-score: 0.466
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
The structure of CVA10 mature virion in complex with Fab 2G8
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6ad0
Q-score: 0.498
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp4 (7 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)
- Sphingosine (299 Da, Ligand)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Vl of fab 2g8 (12 kDa, Protein from Mus musculus)
- Vp2 (27 kDa, Protein from Coxsackievirus A10)
- Vh of fab 2g8 (13 kDa, Protein from Mus musculus)
The structure of CVA10 procapsid from its complex with Fab 2G8
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6ad1
Q-score: 0.481
Zhu R, Xu L, Zheng Q, Cui Y, Li S, He M, Yin Z, Liu D, Li S, Li Z, Chen Z, Yu H, Que Y, Liu C, Kong Z, Zhang J, Baker TS, Yan X, Hong Zhou Z, Cheng T, Xia N
Sci Adv (2018) 4 pp. eaat7459-eaat7459 [ Pubmed: 30255146 DOI: doi:10.1126/sciadv.aat7459 ]
- Vp0 (35 kDa, Protein from Coxsackievirus A10)
- Vp1 (33 kDa, Protein from Coxsackievirus A10)
- Vp3 (26 kDa, Protein from Coxsackievirus A10)
- Coxsackievirus a10 (Virus from Coxsackievirus A10)