Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.
The Tet-S2 state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7xd5
Q-score: 0.504
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- The tet-s2 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (intron and 3'-exon) (129 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- The tet-s2 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (5'-exon) (1 kDa, RNA from Tetrahymena thermophila)
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 7xd6
Q-score: 0.476
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- The tet-s2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (intron and 3'-exon) (140 kDa, RNA from Tetrahymena thermophila)
- The tet-s2 state with a pseudoknotted 4-way junction molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (5'-exon) (8 kDa, RNA from Tetrahymena thermophila)
The relaxed pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Resolution: 4.05 Å
EM Method: Single-particle
Fitted PDBs: 7xd3
Q-score: 0.335
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Magnesium ion (24 Da, Ligand)
- Co-transcriptional folded wild-type tetrahymena group i intron with 6nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- The relaxed pre-tet-s1 state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 6nt 3'/5'-exon (137 kDa, RNA from Tetrahymena thermophila)
The intermediate pre-Tet-S1 state of wild-type Tetrahymena group I intron with 6nt 3'/5'-exon
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7xd4
Q-score: 0.32
The pre-Tet-C state of wild-type Tetrahymena group I intron with 30nt 3'/5'-exon
Resolution: 3.02 Å
EM Method: Single-particle
Fitted PDBs: 7xd7
Q-score: 0.473
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (Complex from Tetrahymena thermophila)
- Spermidine (145 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- The pre-tet-c state molecule of co-transcriptional folded wild-type tetrahymena group i intron with 30nt 3'/5'-exon (130 kDa, RNA from Tetrahymena thermophila)
Resolution: 3.73 Å
EM Method: Single-particle
Fitted PDBs: 8hd6
Q-score: 0.319
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- The relaxed pre-tet-s1 state molecule of co-transcriptional folded g264a mutant tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (135 kDa, RNA from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- Spermidine (145 Da, Ligand)
- Co-transcriptional folded g264a mutant tetrahymena group i intron with 6nt 5'/3'-exon and 2-aminopurine nucleoside (Complex from Tetrahymena thermophila)
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8hd7
Q-score: 0.364
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Spermidine (145 Da, Ligand)
- Co-transcriptional folded g264a mutated tetrahymena group i intron with 6-nt 3'/5'-exon and 2-aminopurine nucleoside (Complex from Tetrahymena thermophila)
- Magnesium ion (24 Da, Ligand)
- The intermediate pre-tet-s1 state molecule of co-transcriptional folded g264a mutant tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (135 kDa, RNA from Tetrahymena thermophila)
Resolution: 2.98 Å
EM Method: Single-particle
Fitted PDBs: 8i7n
Q-score: 0.518
Luo B, Zhang C, Ling X, Mukherjee S, Jia G, Xie J, Jia X, Liu L, Baulin EF, Luo Y, Jiang L, Dong H, Wei X, Bujnicki JM, Su Z
Nat Catal (2023) [ DOI: doi:10.1038/s41929-023-00934-3 ]
- Magnesium ion (24 Da, Ligand)
- Spermidine (145 Da, Ligand)
- The tet-s1 state molecule of co-transcriptional folded g264a mutated tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (134 kDa, RNA from Tetrahymena thermophila)
- Co-transcriptional folded g264a mutated tetrahymena group i intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside (Complex from Tetrahymena thermophila)
- (2r,3r,4s,5r)-2-(2-azanylpurin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol (267 Da, Ligand)