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Wang JYJ, Khmelinskaia A, Sheffler W, Miranda MC, Antanasijevic A, Borst AJ, Torres SV, Shu C, Hsia Y, Nattermann U, Ellis D, Walkey C, Ahlrichs M, Chan S, Kang A, Nguyen H, Sydeman C, Sankaran B, Wu M, Bera AK, Carter L, Fiala B, Murphy M, Baker D, Ward AB, King NP
PNAS (2023) 120 pp. e2214556120-e2214556120 [ DOI: doi:10.1073/pnas.2214556120 Pubmed: 36888664 ]
- Kwoca51 (Protein from synthetic construct)
- Kwoca51 (Complex from synthetic construct)
Structure of OC43 spike in complex with polyclonal Fab10 (Donor 1412)
Bangaru S, Antanasijevic A, Kose N, Sewall LM, Jackson AM, Suryadevara N, Zhan X, Torres JL, Copps J, de la Pena AT, Crowe Jr JE, Ward AB
Sci Adv (2022) 8 pp. eabn2911-eabn2911 [ Pubmed: 35507649 DOI: doi:10.1126/sciadv.abn2911 ]
BG505 SOSIPv5.2 in complex with PGT122 and two RM20E1 Fabs
Derking R, Allen JD, Cottrell CA, Sliepen K, Seabright GE, Lee WH, Aldon Y, Rantalainen K, Antanasijevic A, Copps J, Yasmeen A, Cupo A, Cruz Portillo VM, Poniman M, Bol N, van der Woude P, de Taeye SW, van den Kerkhof TLGM, Klasse PJ, Ozorowski G, van Gils MJ, Moore JP, Ward AB, Crispin M, Sanders RW
Cell Rep (2021) 35 pp. 108933-108933 [ Pubmed: 33826885 DOI: doi:10.1016/j.celrep.2021.108933 ]
Han J, Schmitz AJ, Richey ST, Dai YN, Turner HL, Mohammed BM, Fremont DH, Ellebedy AH, Ward AB
Cell Rep (2021) 34 pp. 108682-108682 [ DOI: doi:10.1016/j.celrep.2020.108682 Pubmed: 33503432 ]
De novo designed icosahedral nanoparticle I53_dn5
Resolution: 5.35 Å
EM Method: Single-particle
Fitted PDBs: 6vfj
Q-score: 0.166
Ueda G, Antanasijevic A, Fallas JA, Sheffler W, Copps J, Ellis D, Hutchinson GB, Moyer A, Yasmeen A, Tsybovsky Y, Park YJ, Bick MJ, Sankaran B, Gillespie RA, Brouwer PJ, Zwart PH, Veesler D, Kanekiyo M, Graham BS, Sanders RW, Moore JP, Klasse PJ, Ward AB, King NP, Baker D
eLife (2020) 9 [ DOI: doi:10.7554/eLife.57659 Pubmed: 32748788 ]
- I53_dn5b (15 kDa, Protein from synthetic construct)
- I53_dn5a (17 kDa, Protein from synthetic construct)
- De novo designed nanoparticle of icosahedral symmetry i53_dn5_np (1 MDa, Complex from synthetic construct)
Resolution: 5.0 Å
EM Method: Single-particle
Fitted PDBs: 6vpx
Q-score: 0.2
Rantalainen K, Berndsen ZT, Antanasijevic A, Schiffner T, Zhang X, Lee WH, Torres JL, Zhang L, Irimia A, Copps J, Zhou KH, Kwon YD, Law WH, Schramm CA, Verardi R, Krebs SJ, Kwong PD, Doria-Rose NA, Wilson IA, Zwick MB, Schief WR, Ward AB
Cell Rep (2020) 31 pp. 107583-107583 [ DOI: doi:10.1016/j.celrep.2020.107583 Pubmed: 32348769 ]
- Mper peptide (2 kDa, Protein from Homo sapiens)
- (2r)-3-(phosphonooxy)propane-1,2-diyl dihexanoate (368 Da, Ligand)
- Amc011 (Complex from Human immunodeficiency virus 1)
- Antibody 10e8 fab heavy chain (14 kDa, Protein from Homo sapiens)
- Envelope glycoprotein gp120 (51 kDa, Protein from Human immunodeficiency virus 1)
- Antibody pgt151 fab light chain (11 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Antibody pgt151 fab heavy chain (15 kDa, Protein from Homo sapiens)
- Mper peptide (Complex from Homo sapiens)
- Nanodisc of full-length hiv-1 envelope glycoprotein clone amc011 in complex with one pgt151 fab and three 10e8 fabs (Complex)
- Antibody 10e8 fab light chain (11 kDa, Protein from Homo sapiens)
- Pgt151 fab (Complex from Homo sapiens)
- Envelope glycoprotein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- 10e8 fab (Complex from Homo sapiens)
PGT145 Fab in complex with full length AMC011 HIV-1 Env
Resolution: 5.7 Å
EM Method: Single-particle
Fitted PDBs: 6nij
Q-score: 0.18
Torrents de la Pena A, Rantalainen K, Cottrell CA, Allen JD, van Gils MJ, Torres JL, Crispin M, Sanders RW, Ward AB
PLoS Pathog (2019) 15 pp. e1007920-e1007920 [ DOI: doi:10.1371/journal.ppat.1007920 Pubmed: 31306470 ]
- Amc011 glycoprotein 41 (Complex from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Pgt145 fab heavy chain (15 kDa, Protein from Homo sapiens)
- Pgt145 (Complex from Homo sapiens)
- Amc011 glycoprotein 120 (52 kDa, Protein from Human immunodeficiency virus 1)
- Amc011 glycoprotein 120 (Complex from Homo sapiens)
- Pgt145 fab light chain (12 kDa, Protein from Homo sapiens)
- Amc011 glycoprotein 41 (39 kDa, Protein from Human immunodeficiency virus 1)
- Pgt145 fab in complex with full length amc011 hiv-1 env (Complex)
Resolution: 5.2 Å
EM Method: Single-particle
Fitted PDBs: 6nc2
Q-score: 0.216
Yuan M, Cottrell CA, Ozorowski G, van Gils MJ, Kumar S, Wu NC, Sarkar A, Torres JL, de Val N, Copps J, Moore JP, Sanders RW, Ward AB, Wilson IA
Cell Host Microbe (2019) 25 pp. 873- [ Pubmed: 31194940 DOI: doi:10.1016/j.chom.2019.04.011 ]
- Monoclonal antibody acs202 fragment antigen binding heavy chain (27 kDa, Protein from Homo sapiens)
- Monoclonal antibody acs202 fragment antigen binding kappa chain (25 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Amc011 v4.2 sosip gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- Vrc34.01 (Complex from Homo sapiens)
- Amc011 v4.2 sosip gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 env amc011 v4.2 sosip gp120 (Complex from Human immunodeficiency virus 1)
- Complex of amc011 v4.2 sosip trimer and acs202 fragment antigen binding (570 kDa, Complex)
- Hiv-1 env amc011 v4.2 sosip gp41 (Complex from Human immunodeficiency virus 1)
HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP.664 in complex with PCT64_13C Fab
Rantalainen K, Berndsen ZT, Murrell S, Cao L, Omorodion O, Torres JL, Wu M, Umotoy J, Copps J, Poignard P, Landais E, Paulson JC, Wilson IA, Ward AB
Cell Rep (2018) 23 pp. 3249-3261 [ Pubmed: 29898396 DOI: doi:10.1016/j.celrep.2018.05.046 ]
- Immunoglobulin g pct64-13c fab, light chain (Protein from Homo sapiens)
- Immunoglobulin g pct64-13c fab, heavy chain (Protein from Homo sapiens)
- Hiv-1 envelope glycoprotein clone pc64m4c054.sosip.664 in complex with pct64_13c fab (Complex from Human immunodeficiency virus 1)
- Hiv-1 envelope glycoprotein clone pc64m4c054.sosip.664 (Protein from Human immunodeficiency virus 1)
HIV-1 Envelope Glycoprotein clone PC64M4C054.SOSIP in complex with PCT64-35S Fab
Rantalainen K, Berndsen ZT, Murrell S, Cao L, Omorodion O, Torres JL, Wu M, Umotoy J, Copps J, Poignard P, Landais E, Paulson JC, Wilson IA, Ward AB
Cell Rep (2018) 23 pp. 3249-3261 [ Pubmed: 29898396 DOI: doi:10.1016/j.celrep.2018.05.046 ]
- Immunoglobulin g pct64-35s fab, light chain (Protein from Homo sapiens)
- Hiv-1 envelope glycoprotein clone pc64m4c054.sosip.664 (Protein from Human immunodeficiency virus 1)
- Immunoglobulin g pct64-35s fab, heavy chain (Protein from Homo sapiens)
- Hiv-1 envelope glycoprotein clone pc64m4c054.sosip.664 in complex with pct64-35s fab (Complex from Homo sapiens)