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CryoEM structure of an anti-CRISPR protein AcrIIC5 bound to Nme1Cas9-sgRNA complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8hj4
Q-score: 0.425
Sun W, Zhao X, Wang J, Yang X, Cheng Z, Liu S, Wang J, Sheng G, Wang Y
Nucleic Acids Res (2023) 51 pp. 1984-1995 [ DOI: doi:10.1093/nar/gkad052 Pubmed: 36744495 ]
- Crispr-associated endonuclease cas9 (124 kDa, Protein from Neisseria meningitidis serogroup C (strain 8013))
- Complex of acriic5 with sgrna-bound nme1cas9 (183 MDa, Complex from Neisseria meningitidis 8013)
- Phage protein (15 kDa, Protein from Simonsiella muelleri ATCC 29453)
- Sgrna (43 kDa, RNA from Neisseria meningitidis 8013)
Streptomyces coelicolor zinc uptake regulator complexed with zinc and DNA (trimer of dimers)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7vo0
Q-score: 0.403
Yang X, Wang Y, Liu G, Deng Z, Lin S, Zheng J
Nucleic Acids Res (2022) 50 pp. 8363-8376 [ Pubmed: 35871291 DOI: doi:10.1093/nar/gkac627 ]
- Zur-dna (250 MDa, Complex from Streptomyces coelicolor A3(2))
- Dna_t (84-mer) (26 kDa, DNA from Streptomyces coelicolor A3(2))
- Dna_nt (84-mer) (25 kDa, DNA from Streptomyces coelicolor A3(2))
- Zinc ion (65 Da, Ligand)
- Putative metal uptake regulation protein (16 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Streptomyces coelicolor zinc uptake regulator complexed with zinc and DNA (dimer of dimers)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7vo9
Q-score: 0.307
Yang X, Wang Y, Liu G, Deng Z, Lin S, Zheng J
Nucleic Acids Res (2022) 50 pp. 8363-8376 [ Pubmed: 35871291 DOI: doi:10.1093/nar/gkac627 ]
- Zur-dna (250 MDa, Complex from Streptomyces coelicolor A3(2))
- Zinc ion (65 Da, Ligand)
- Dna (84-mer) (25 kDa, DNA from Streptomyces coelicolor A3(2))
- Dna (84-mer) (26 kDa, DNA from Streptomyces coelicolor A3(2))
- Putative metal uptake regulation protein (16 kDa, Protein from Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145))
Cryo-EM structure of Streptomyces coelicolor RNAP-promoter open complex with one Zur dimers
Resolution: 3.77 Å
EM Method: Single-particle
Fitted PDBs: 7vpd
Q-score: 0.31
Yang X, Wang Y, Liu G, Deng Z, Lin S, Zheng J
Nucleic Acids Res (2022) 50 pp. 8363-8376 [ Pubmed: 35871291 DOI: doi:10.1093/nar/gkac627 ]
- Rna polymerase sigma factor siga (58 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit beta' (145 kDa, Protein from Streptomyces coelicolor A3(2))
- Cryo-em structure of streptomyces coelicolor rnap-promoter open complex with one zur dimers (560 kDa, Complex from Streptomyces coelicolor A3(2))
- Zinc ion (65 Da, Ligand)
- Dna (84-mer) (26 kDa, DNA from Streptomyces coelicolor A3(2))
- Magnesium ion (24 Da, Ligand)
- Putative metal uptake regulation protein (16 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna (84-mer) (25 kDa, DNA from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Streptomyces coelicolor A3(2))
Cryo-EM structure of Streptomyces coelicolor transcription initial complex with one Zur dimer
Resolution: 4.14 Å
EM Method: Single-particle
Fitted PDBs: 7vpz
Q-score: 0.262
Yang X, Wang Y, Liu G, Deng Z, Lin S, Zheng J
Nucleic Acids Res (2022) 50 pp. 8363-8376 [ Pubmed: 35871291 DOI: doi:10.1093/nar/gkac627 ]
- Rna (1 kDa, RNA from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit beta' (145 kDa, Protein from Streptomyces coelicolor A3(2))
- Rna polymerase principal sigma factor hrdb (58 kDa, Protein from Streptomyces coelicolor A3(2))
- Cryo-em structure of streptomyces coelicolor transcription initial complex with one zur dimer (560 kDa, Complex from Streptomyces coelicolor A3(2))
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Putative metal uptake regulation protein (16 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna (84-mer) (26 kDa, DNA from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna (84-mer) (25 kDa, DNA from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Streptomyces coelicolor A3(2))
Cryo-EM structure of Streptomyces coelicolor transcription initial complex with two Zur dimers.
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7x74
Q-score: 0.317
Yang X, Wang Y, Liu G, Deng Z, Lin S, Zheng J
Nucleic Acids Res (2022) 50 pp. 8363-8376 [ Pubmed: 35871291 DOI: doi:10.1093/nar/gkac627 ]
- Rna (1 kDa, RNA from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit beta' (145 kDa, Protein from Streptomyces coelicolor A3(2))
- Cryo-em structure of streptomyces coelicolor transcription initial complex with two zur dimers (560 kDa, Complex from Streptomyces coelicolor A3(2))
- Rna polymerase principal sigma factor hrdb (58 kDa, Protein from Streptomyces coelicolor A3(2))
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Putative metal uptake regulation protein (16 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna (84-mer) (26 kDa, DNA from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna (84-mer) (25 kDa, DNA from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Streptomyces coelicolor A3(2))
Cryo-EM structure of Streptomyces coelicolor RNAP-promoter open complex with three Zur dimers
Resolution: 3.45 Å
EM Method: Single-particle
Fitted PDBs: 7x75
Q-score: 0.33
Yang X, Wang Y, Liu G, Deng Z, Lin S, Zheng J
Nucleic Acids Res (2022) 50 pp. 8363-8376 [ Pubmed: 35871291 DOI: doi:10.1093/nar/gkac627 ]
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Streptomyces coelicolor A3(2))
- Cryo-em structure of streptomyces coelicolor rnap-promoter open complex with three zur dimers (560 kDa, Complex from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit beta' (145 kDa, Protein from Streptomyces coelicolor A3(2))
- Rna polymerase principal sigma factor hrdb (58 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna (84-mer) (26 kDa, DNA from Streptomyces coelicolor A3(2))
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Putative metal uptake regulation protein (16 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna (84-mer) (25 kDa, DNA from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Streptomyces coelicolor A3(2))
Cryo-EM structure of Streptomyces coelicolor RNAP-promoter open complex with two Zur dimers
Resolution: 3.67 Å
EM Method: Single-particle
Fitted PDBs: 7x76
Q-score: 0.313
Yang X, Wang Y, Liu G, Deng Z, Lin S, Zheng J
Nucleic Acids Res (2022) 50 pp. 8363-8376 [ Pubmed: 35871291 DOI: doi:10.1093/nar/gkac627 ]
- Dna-directed rna polymerase subunit beta (128 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit beta' (145 kDa, Protein from Streptomyces coelicolor A3(2))
- Rna polymerase principal sigma factor hrdb (58 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna (84-mer) (26 kDa, DNA from Streptomyces coelicolor A3(2))
- Zinc ion (65 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Cryo-em structure of streptomyces coelicolor rnap-promoter open complex with two zur dimers (560 kDa, Complex from Streptomyces coelicolor A3(2))
- Putative metal uptake regulation protein (16 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Streptomyces coelicolor A3(2))
- Dna (84-mer) (25 kDa, DNA from Streptomyces coelicolor A3(2))
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Streptomyces coelicolor A3(2))