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Cryo-EM structure of the ClpP degradation system in Streptomyces hawaiiensis
Resolution: 2.34 Å
EM Method: Single-particle
Fitted PDBs: 8xn4
Q-score: 0.56
Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis
Resolution: 1.96 Å
EM Method: Single-particle
Fitted PDBs: 8xon
Q-score: 0.503
Xu X, Wang Y, Huang W, Li D, Deng Z, Long F
Mbio (2024) 15 pp. e0003124-e0003124 [ DOI: doi:10.1128/mbio.00031-24 Pubmed: 38501868 ]
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Streptomyces hawaiiensis)
- Casein (2 kDa, Protein from Bos taurus)
- Atp-dependent clp protease proteolytic subunit (24 kDa, Protein from Streptomyces hawaiiensis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Clpp1,clpp2,clpc1,casein (Complex from Streptomyces hawaiiensis)
- Ndp-hexose 4-ketoreductase (77 kDa, Protein from Streptomyces hawaiiensis)
Cryo-EM structure of the ClpC1:ClpP1P2 degradation complex in Streptomyces hawaiiensis
Resolution: 1.84 Å
EM Method: Single-particle
Fitted PDBs: 8xoo
Q-score: 0.514
Xu X, Wang Y, Huang W, Li D, Deng Z, Long F
Mbio (2024) 15 pp. e0003124-e0003124 [ DOI: doi:10.1128/mbio.00031-24 Pubmed: 38501868 ]
- Clpp1,clpp2,clpc1,casein (Complex from Streptomyces hawaiiensis)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Streptomyces hawaiiensis)
- Atp-dependent clp protease proteolytic subunit (24 kDa, Protein from Streptomyces hawaiiensis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Casein (2 kDa, Protein from Bos taurus)
- Ndp-hexose 4-ketoreductase (77 kDa, Protein from Streptomyces hawaiiensis)
Cryo-EM structure of ClpP1P2 in complex with ADEP1 from Streptomyces hawaiiensis
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8xop
Q-score: 0.498
Xu X, Wang Y, Huang W, Li D, Deng Z, Long F
Mbio (2024) 15 pp. e0003124-e0003124 [ DOI: doi:10.1128/mbio.00031-24 Pubmed: 38501868 ]
- Adep1 (736 Da, Protein from synthetic construct)
- Atp-dependent clp protease proteolytic subunit (22 kDa, Protein from Streptomyces hawaiiensis)
- Atp-dependent clp protease proteolytic subunit (24 kDa, Protein from Streptomyces hawaiiensis)
- Clpp1,clpp2 (Complex from Streptomyces hawaiiensis)
Cryo-EM structure of viral topoisomerase in conformation 1
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8j9y
Q-score: 0.523
Zhao Y, Kuang W, An Q, Li J, Wang Y, Deng Z
Mbio (2023) 14 pp. e0122823-e0122823 [ DOI: doi:10.1128/mbio.01228-23 Pubmed: 37610250 ]
- P1192r (135 MDa, Complex from African swine fever virus LIS57)
- Dna topoisomerase 2 (135 kDa, Protein from African swine fever virus LIS57)
Cryo-EM structure of viral topoisomerase in conformation 2
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8j9z
Q-score: 0.529
Zhao Y, Kuang W, An Q, Li J, Wang Y, Deng Z
Mbio (2023) 14 pp. e0122823-e0122823 [ DOI: doi:10.1128/mbio.01228-23 Pubmed: 37610250 ]
- P1192r (135 MDa, Complex from African swine fever virus LIS57)
- Dna topoisomerase 2 (135 kDa, Protein from African swine fever virus LIS57)
CryoEM structure of HpaCas9-sgRNA-dsDNA in the presence of AcrIIC4
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8hnv
Q-score: 0.464
Sun W, Cheng Z, Wang J, Yang J, Li X, Wang J, Chen M, Yang X, Sheng G, Lou J, Wang Y
PNAS (2023) 120 pp. e2303675120-e2303675120 [ Pubmed: 37494395 DOI: doi:10.1073/pnas.2303675120 ]
- Anti-crispr protein acriic4 (10 kDa, Protein from Haemophilus parainfluenzae)
- Target strand (10 kDa, DNA from Haemophilus parainfluenzae)
- Rna/dna (Complex)
- Non-target strand (10 kDa, DNA from Haemophilus parainfluenzae)
- Sgrna (40 kDa, RNA from synthetic construct)
- Crispr-associated endonuclease cas9 (121 kDa, Protein from Haemophilus parainfluenzae)
- Complex of hpacas9-sgrna-dna in the presence of acriic4 (194 kDa, Complex from Haemophilus parainfluenzae)
- Hpacas9/acriic4 (Complex)