Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research.
Cryo-EM structure of SARS-CoV-2 BA.4/5 spike protein in complex with 1G11 (local refinement)
Resolution: 3.98 Å
EM Method: Single-particle
Fitted PDBs: 8ix3
Q-score: 0.451
Sun H, Wang Y, Chen X, Jiang Y, Wang S, Huang Y, Liu L, Li Y, Lan M, Guo H, Yuan Q, Zhang Y, Li T, Yu H, Gu Y, Zhang J, Li S, Zheng Z, Zheng Q, Xia N
J Virol (2023) 97 pp. e0113723-e0113723 [ DOI: doi:10.1128/jvi.01137-23 Pubmed: 37855619 ]
- Light chain of 1g11 (11 kDa, Protein from Homo sapiens)
- Heavy chain of 1g11 (13 kDa, Protein from Homo sapiens)
- Sars-cov-2 ba.4/5 spike protein (Complex from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 ba.4/5 spike protein in complex with 1g11 (Complex)
- Nab 1g11 (Complex from Homo sapiens)
- Ba.4/5 variant spike protein (23 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of SARS-CoV-2 BA.4/5 spike protein in complex with 1G11 (state 2)
Cryo-EM structure of SARS-CoV-2 BA.4/5 spike protein in complex with 1G11 (state 1)
The local refined map of Omicron spike with bispecific antibody FD01
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 7wop
Q-score: 0.318
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 (25 kDa, Protein from Homo sapiens)
- 16l9 and gw01 (Complex from Homo sapiens)
- Omicron spike with 16l9 and gw01 (Complex)
- Gw01 (26 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
The state 1 of Omicron Spike with bispecific antibody FD01
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7woq
Q-score: 0.322
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Omicron spike with 16l9 fv (Complex)
- 16l9 fv (Complex from Homo sapiens)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
The state 2 of Omicron Spike with bispecific antibody FD01
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wor
Q-score: 0.236
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- Omicron spike with 16l9 and gw01 (Complex)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
The state 3 of Omicron Spike with bispecific antibody FD01
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 7wos
Q-score: 0.235
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- Omicron spike with 16l9 and gw01 (Complex)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
The state 4 of Omicron Spike with bispecific antibody FD01
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7wou
Q-score: 0.24
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- Omicron spike with 16l9 and gw01 (Complex)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
The state 5 of Omicron Spike with bispecific antibody FD01
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 7wov
Q-score: 0.185
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- Omicron spike with 16l9 and gw01 (Complex)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
The state 6 of Omicron Spike with bispecific antibody FD01
Resolution: 6.11 Å
EM Method: Single-particle
Fitted PDBs: 7wow
Q-score: 0.102
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ DOI: doi:10.1038/s41421-022-00463-6 Pubmed: 36207299 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- Omicron spike with 16l9 and gw01 (Complex)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
- Gw01 fv (26 kDa, Protein from Homo sapiens)