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Structure of the Marseillevirus nucleosome
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7lv8
Q-score: 0.431
Valencia-Sanchez MI, Abini-Agbomson S, Wang M, Lee R, Vasilyev N, Zhang J, De Ioannes P, La Scola B, Talbert P, Henikoff S, Nudler E, Erives A, Armache KJ
Nat Struct Mol Biol (2021) 28 pp. 413-417 [ Pubmed: 33927388 DOI: doi:10.1038/s41594-021-00585-7 ]
- Histone doublet delta-gamma (gamma) (11 kDa, Protein from Marseillevirus marseillevirus)
- Histone doublet delta-gamma (delta) (10 kDa, Protein from Marseillevirus marseillevirus)
- Histone doublet beta-alpha (beta) (11 kDa, Protein from Marseillevirus marseillevirus)
- Dna (123-mer) (37 kDa, DNA from synthetic construct)
- Dna (123-mer) (37 kDa, DNA from synthetic construct)
- Histone doublet beta-alpha (alpha) (17 kDa, Protein from Marseillevirus marseillevirus)
- Structure of the marseillevirus nucleosome (Complex from synthetic construct)
Marseillevirus heterotrimeric (hexameric) nucleosome
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7lv9
Q-score: 0.217
Valencia-Sanchez MI, Abini-Agbomson S, Wang M, Lee R, Vasilyev N, Zhang J, De Ioannes P, La Scola B, Talbert P, Henikoff S, Nudler E, Erives A, Armache KJ
Nat Struct Mol Biol (2021) 28 pp. 413-417 [ Pubmed: 33927388 DOI: doi:10.1038/s41594-021-00585-7 ]
- Histone doublet delta-gamma (gamma) (11 kDa, Protein from Marseillevirus marseillevirus)
- Histone doublet delta-gamma (delta) (10 kDa, Protein from Marseillevirus marseillevirus)
- Dna (96-mer) (29 kDa, DNA from synthetic construct)
- Dna (96-mer) (29 kDa, DNA from synthetic construct)
- Histone doublet beta-alpha (beta) (11 kDa, Protein from Marseillevirus marseillevirus)
- Marseillevirus heterotrimeric (hexameric) nucleosome (Complex from synthetic construct)
- Histone doublet beta-alpha (alpha) (17 kDa, Protein from Marseillevirus marseillevirus)
Structure of Lassa virus polymerase bound to Z matrix protein
Resolution: 3.88 Å
EM Method: Single-particle
Fitted PDBs: 7ckl
Q-score: 0.343
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w ]
- Lassa virus polymerase in complex with z matrix protein (260 kDa, Complex from Lassa mammarenavirus)
- Ring finger protein z (10 kDa, Protein from Lassa mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
- Zinc ion (65 Da, Ligand)
Structure of Machupo virus polymerase bound to Z matrix protein (monomeric complex)
Resolution: 3.37 Å
EM Method: Single-particle
Fitted PDBs: 7ckm
Q-score: 0.491
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ DOI: doi:10.1038/s41564-021-00916-w ]
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo virus)
- Manganese (ii) ion (54 Da, Ligand)
- Ring finger protein z (10 kDa, Protein from Machupo virus)
- Zinc ion (65 Da, Ligand)
- Machupo virus polymerase in complex with z matrix protein (260 kDa, Complex from Machupo mammarenavirus)
Structure of Machupo virus L polymerase in complex with Z protein and 3'-vRNA (dimeric complex)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7el9
Q-score: 0.415
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ Pubmed: 34127846 DOI: doi:10.1038/s41564-021-00916-w ]
- Machupo virus 3'-vrna promoter (Complex from Machupo mammarenavirus)
- Machupo virus 3'-vrna promoter (6 kDa, RNA from Machupo mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
- Machupo virus polymerase in complex with z martix protein and 3'-vrna in dimeric form. (580 kDa, Complex from Machupo mammarenavirus)
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- Machupo virus polymerase (Complex)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
- Machupo virus z matrix protein (Complex)
- Zinc ion (65 Da, Ligand)
Structure of Lassa virus polymerase in complex with 3'-vRNA and Z mutant (F36A)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7ela
Q-score: 0.447
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ Pubmed: 34127846 DOI: doi:10.1038/s41564-021-00916-w ]
- Lassa virus polymerase (Complex)
- Manganese (ii) ion (54 Da, Ligand)
- Lassa virus polymerase in complex with 3'-vrna and z mutant (f36a). (270 kDa, Complex from Lassa mammarenavirus)
- Ring finger protein z (10 kDa, Protein from Lassa mammarenavirus)
- 3-'vrna promoter (Complex from Lassa mammarenavirus)
- Lassa virus z protein (Complex)
- Zinc ion (65 Da, Ligand)
- Rna-directed rna polymerase l (253 kDa, Protein from Lassa mammarenavirus)
- 3-'vrna promoter (6 kDa, RNA from Lassa mammarenavirus)
Structure of Machupo virus L polymerase in complex with Z protein (dimeric form)
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7elb
Q-score: 0.229
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ Pubmed: 34127846 DOI: doi:10.1038/s41564-021-00916-w ]
- Manganese (ii) ion (54 Da, Ligand)
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- Machupo virus polymerase in complex with z protein (dimeric form). (580 kDa, Complex from Machupo mammarenavirus)
- Machupo virus polymerase (Complex from Machupo mammarenavirus)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
- Machupo virus z matrix protein (Complex)
- Zinc ion (65 Da, Ligand)
Structure of monomeric complex of MACV L bound to Z and 3'-vRNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7elc
Q-score: 0.501
Xu X, Peng R, Peng Q, Wang M, Xu Y, Liu S, Tian X, Deng H, Tong Y, Hu X, Zhong J, Wang P, Qi J, Gao GF, Shi Y
Nat Microbiol (2021) 6 pp. 921-931 [ Pubmed: 34127846 DOI: doi:10.1038/s41564-021-00916-w ]
- Machupo virus polymerase in complex with z matrix protein and 3'-vrna in monomeric form (270 kDa, Complex from Machupo mammarenavirus)
- Machupo virus polymerse (Complex from Machupo mammarenavirus)
- Manganese (ii) ion (54 Da, Ligand)
- 3'-vrna promoter (Complex)
- Ring finger protein z (10 kDa, Protein from Machupo mammarenavirus)
- Rna-directed rna polymerase l (250 kDa, Protein from Machupo mammarenavirus)
- 3'-vrna promoter (6 kDa, RNA from Machupo mammarenavirus)
- Machupo virus z martix protein (Complex)
- Zinc ion (65 Da, Ligand)
Cryo-EM map of PRC2:EZH1-AEBP2
Grau D, Zhang Y, Lee CH, Valencia-Sanchez M, Zhang J, Wang M, Holder M, Svetlov V, Tan D, Nudler E, Reinberg D, Walz T, Armache KJ
Nat Commun (2021) 12 pp. 714-714 [ Pubmed: 33514705 DOI: doi:10.1038/s41467-020-20775-z ]
- Prc2:ezh1-aebp2 (299 kDa, Complex from Homo sapiens)
- Eed (Protein from Homo sapiens)
- Ezh1 (Protein from Homo sapiens)
- Suz12 (Protein from Homo sapiens)
- Rbap48 (Protein from Homo sapiens)
- Aebp2 (Protein from Homo sapiens)
structure of influenza D virus apo polymerase
Resolution: 4.6 Å
EM Method: Single-particle
Fitted PDBs: 6kv5
Q-score: 0.213
Peng Q, Liu Y, Peng R, Wang M, Yang W, Song H, Chen Y, Liu S, Han M, Zhang X, Wang P, Yan J, Zhang B, Qi J, Deng T, Gao GF, Shi Y
Nat Microbiol (2019) [ Pubmed: 31209309 DOI: doi:10.1038/s41564-019-0487-5 ]
- Polymerase 3 (83 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Polymerase pb2 (88 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))
- Influenza d virus polymerase (270 kDa, Complex from Thogotovirus)
- Rna-directed rna polymerase catalytic subunit (86 kDa, Protein from Influenza D virus (D/swine/Oklahoma/1334/2011))