Structure of the Marseillevirus nucleosome
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7lv8
Q-score: 0.431
Valencia-Sanchez MI, Abini-Agbomson S, Wang M, Lee R, Vasilyev N, Zhang J, De Ioannes P, La Scola B, Talbert P, Henikoff S, Nudler E, Erives A, Armache KJ
Nat Struct Mol Biol (2021) 28 pp. 413-417 [ Pubmed: 33927388 DOI: doi:10.1038/s41594-021-00585-7 ]
- Histone doublet beta-alpha (beta) (11 kDa, Protein from Marseillevirus marseillevirus)
- Dna (123-mer) (37 kDa, DNA from synthetic construct)
- Structure of the marseillevirus nucleosome (Complex from synthetic construct)
- Histone doublet beta-alpha (alpha) (17 kDa, Protein from Marseillevirus marseillevirus)
- Dna (123-mer) (37 kDa, DNA from synthetic construct)
- Histone doublet delta-gamma (gamma) (11 kDa, Protein from Marseillevirus marseillevirus)
- Histone doublet delta-gamma (delta) (10 kDa, Protein from Marseillevirus marseillevirus)
Marseillevirus heterotrimeric (hexameric) nucleosome
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7lv9
Q-score: 0.217
Valencia-Sanchez MI, Abini-Agbomson S, Wang M, Lee R, Vasilyev N, Zhang J, De Ioannes P, La Scola B, Talbert P, Henikoff S, Nudler E, Erives A, Armache KJ
Nat Struct Mol Biol (2021) 28 pp. 413-417 [ Pubmed: 33927388 DOI: doi:10.1038/s41594-021-00585-7 ]
- Histone doublet beta-alpha (beta) (11 kDa, Protein from Marseillevirus marseillevirus)
- Histone doublet beta-alpha (alpha) (17 kDa, Protein from Marseillevirus marseillevirus)
- Marseillevirus heterotrimeric (hexameric) nucleosome (Complex from synthetic construct)
- Dna (96-mer) (29 kDa, DNA from synthetic construct)
- Dna (96-mer) (29 kDa, DNA from synthetic construct)
- Histone doublet delta-gamma (gamma) (11 kDa, Protein from Marseillevirus marseillevirus)
- Histone doublet delta-gamma (delta) (10 kDa, Protein from Marseillevirus marseillevirus)
Cryo-EM structure of PRC2:EZH1-AEBP2-JARID2
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7kso
Q-score: 0.379
Grau D, Zhang Y, Lee CH, Valencia-Sanchez M, Zhang J, Wang M, Holder M, Svetlov V, Tan D, Nudler E, Reinberg D, Walz T, Armache KJ
Nat Commun (2021) 12 pp. 714-714 [ Pubmed: 33514705 DOI: doi:10.1038/s41467-020-20775-z ]
- Protein jumonji (138 kDa, Protein from Homo sapiens)
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Polycomb protein suz12 (83 kDa, Protein from Homo sapiens)
- Histone-lysine n-methyltransferase ezh1 (85 kDa, Protein from Homo sapiens)
- Polycomb protein eed (50 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Prc2:ezh1-aebp2-jarid2 (330 kDa, Complex from Homo sapiens)
- Zinc finger protein aebp2 (33 kDa, Protein from Homo sapiens)
Cryo-EM map of PRC2:EZH1-AEBP2
Grau D, Zhang Y, Lee CH, Valencia-Sanchez M, Zhang J, Wang M, Holder M, Svetlov V, Tan D, Nudler E, Reinberg D, Walz T, Armache KJ
Nat Commun (2021) 12 pp. 714-714 [ Pubmed: 33514705 DOI: doi:10.1038/s41467-020-20775-z ]
- Eed (Protein from Homo sapiens)
- Aebp2 (Protein from Homo sapiens)
- Prc2:ezh1-aebp2 (299 kDa, Complex from Homo sapiens)
- Suz12 (Protein from Homo sapiens)
- Ezh1 (Protein from Homo sapiens)
- Rbap48 (Protein from Homo sapiens)
PRC2:EZH1_A from a dimeric PRC2 bound to a nucleosome
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 7ksr
Q-score: 0.287
Grau D, Zhang Y, Lee CH, Valencia-Sanchez M, Zhang J, Wang M, Holder M, Svetlov V, Tan D, Nudler E, Reinberg D, Walz T, Armache KJ
Nat Commun (2021) 12 pp. 714-714 [ Pubmed: 33514705 DOI: doi:10.1038/s41467-020-20775-z ]
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Polycomb protein suz12 (83 kDa, Protein from Homo sapiens)
- Histone-lysine n-methyltransferase ezh1 (85 kDa, Protein from Homo sapiens)
- Prc2:ezh1_a from a prc2:ezh1 dimer bound to a nucleosome (266 kDa, Complex from Homo sapiens)
- Polycomb protein eed (50 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
PRC2:EZH1_B from a dimeric PRC2 bound to a nucleosome
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 7ktp
Q-score: 0.207
Grau D, Zhang Y, Lee CH, Valencia-Sanchez M, Zhang J, Wang M, Holder M, Svetlov V, Tan D, Nudler E, Reinberg D, Walz T, Armache KJ
Nat Commun (2021) 12 pp. 714-714 [ Pubmed: 33514705 DOI: doi:10.1038/s41467-020-20775-z ]
- Histone-binding protein rbbp4 (47 kDa, Protein from Homo sapiens)
- Polycomb protein suz12 (83 kDa, Protein from Homo sapiens)
- Histone-lysine n-methyltransferase ezh1 (85 kDa, Protein from Homo sapiens)
- Prc2:ezh1_a from a prc2:ezh1 dimer bound to a nucleosome (266 kDa, Complex from Homo sapiens)
- Polycomb protein eed (50 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
Nucleosome from a dimeric PRC2 bound to a nucleosome
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ktq
Q-score: 0.494
Grau D, Zhang Y, Lee CH, Valencia-Sanchez M, Zhang J, Wang M, Holder M, Svetlov V, Tan D, Nudler E, Reinberg D, Walz T, Armache KJ
Nat Commun (2021) 12 pp. 714-714 [ Pubmed: 33514705 DOI: doi:10.1038/s41467-020-20775-z ]
- Histone h2a (11 kDa, Protein from Xenopus laevis)
- Histone h2b (10 kDa, Protein from Xenopus laevis)
- 601 dna (167-mer) (51 kDa, DNA from Homo sapiens)
- 601 dna (167-mer) (51 kDa, DNA from Homo sapiens)
- Histone h4 (8 kDa, Protein from Xenopus laevis)
- Nucleosome from a prc2:ezh1 dimer bound to a nucleosome (220 kDa, Complex from Xenopus laevis)
- Histone h3 (11 kDa, Protein from Xenopus laevis)
PRC2:EZH1 dimer bound to a nucleosome (composite map)
Grau D, Zhang Y, Lee CH, Valencia-Sanchez M, Zhang J, Wang M, Holder M, Svetlov V, Tan D, Nudler E, Reinberg D, Walz T, Armache KJ
Nat Commun (2021) 12 pp. 714-714 [ Pubmed: 33514705 DOI: doi:10.1038/s41467-020-20775-z ]
- Eed (Protein from Homo sapiens)
- Aebp2 (Protein from Homo sapiens)
- Jarid2 (Protein from Homo sapiens)
- Prc2:ezh1_a from a prc2:ezh1 dimer bound to a nucleosome (266 kDa, Complex from Homo sapiens)
- Histone h4 (Protein from Xenopus laevis)
- Suz12 (Protein from Homo sapiens)
- Histone h2b (Protein from Xenopus laevis)
- Histone h3 (Protein from Xenopus laevis)
- Ezh1 (Protein from Homo sapiens)
- Rbap48 (Protein from Homo sapiens)
- Histone h2a (Protein from Xenopus laevis)
- 167bp dna 601 strand (DNA from Homo sapiens)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6o96
Q-score: 0.38
Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ
Mol Cell (2019) 74 pp. 1010-1019.e6 [ DOI: doi:10.1016/j.molcel.2019.03.029 Pubmed: 30981630 ]
Valencia-Sanchez MI, De Ioannes P, Wang M, Vasilyev N, Chen R, Nudler E, Armache JP, Armache KJ
Mol Cell (2019) 74 pp. 1010-1019.e6 [ DOI: doi:10.1016/j.molcel.2019.03.029 Pubmed: 30981630 ]