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CryoEM structure of A/Perth/16/2009 H3 in complex with flu HA central stem VH1-18 antibody UCA6
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ut3
Q-score: 0.58
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ DOI: doi:10.1016/j.immuni.2024.03.022 Pubmed: 38670113 ]
- Uca6 hc fv (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin (62 kDa, Protein from Influenza A virus)
- Uca6 lc fv (11 kDa, Protein from Homo sapiens)
- An uca6 fab complex with one protomer of a h3 trimer (Complex from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8ut4
Q-score: 0.433
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ DOI: doi:10.1016/j.immuni.2024.03.022 Pubmed: 38670113 ]
- An 09-1b12 fab complex with one protomer of a h1 trimer (Complex from Influenza A virus)
- 09-1b12 hc fv (13 kDa, Protein from Homo sapiens)
- Hemagglutinin ha2 chain (28 kDa, Protein from Influenza A virus)
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- 09-1b12 fab (Complex from Homo sapiens)
- 09-1b12 lc fv (12 kDa, Protein from Homo sapiens)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8ut5
Q-score: 0.439
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ DOI: doi:10.1016/j.immuni.2024.03.022 Pubmed: 38670113 ]
- Uca6_n55t lc fv (11 kDa, Protein from Homo sapiens)
- Hemagglutinin ha2 chain (28 kDa, Protein from Influenza A virus)
- Hemagglutinin ha1 chain (36 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Uca6_n55t hc fv (13 kDa, Protein from Homo sapiens)
- An uca6 fab complex with one protomer of a h3 trimer (Complex from Homo sapiens)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8ut6
Q-score: 0.549
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ DOI: doi:10.1016/j.immuni.2024.03.022 Pubmed: 38670113 ]
- H3d15 pfab hc fv_polya (10 kDa, Protein from Mus musculus)
- H3d15 pfab lc fv_polya (9 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin (62 kDa, Protein from Influenza A virus)
- Polyclonal fab purified from mice sera (Complex from Mus musculus)
- Mice polyclonal fab complex with one protomer of a h3 trimer (Complex from Influenza A virus)
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8ut7
Q-score: 0.591
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ DOI: doi:10.1016/j.immuni.2024.03.022 Pubmed: 38670113 ]
- H3d28 pfab hc fv_polya (10 kDa, Protein from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin (62 kDa, Protein from Influenza A virus)
- Polyclonal fab purified from mice sera (Complex from Mus musculus)
- H3d28 pfab lc fv_polya (9 kDa, Protein from Mus musculus)
- A/perth/16/2009 h3 (Complex from Influenza A virus)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8ut8
Q-score: 0.442
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ DOI: doi:10.1016/j.immuni.2024.03.022 Pubmed: 38670113 ]
- H7d15 polyclonal fab purified from mice sera (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- H7d15 pfab lc fv_polya (9 kDa, Protein from Mus musculus)
- Mice polyclonal fab complex with one protomer of a h7 trimer (Complex from Influenza A virus)
- Hemagglutinin ha2 chain (26 kDa, Protein from Influenza A virus)
- H7d15 pfab hc fv_polya (10 kDa, Protein from Mus musculus)
- Hemagglutinin ha1 chain (34 kDa, Protein from Influenza A virus)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8ut9
Q-score: 0.461
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ DOI: doi:10.1016/j.immuni.2024.03.022 Pubmed: 38670113 ]
- H7d28 polyclonal fab purified from mice sera (Complex from Mus musculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- H7d28 pfab lc fv_polya (9 kDa, Protein from Mus musculus)
- Mice polyclonal fab complex with one protomer of a h7 trimer (Complex from Influenza A virus)
- H7d28 pfab hc fv_polya (10 kDa, Protein from Mus musculus)
- Hemagglutinin ha2 chain (26 kDa, Protein from Influenza A virus)
- Hemagglutinin ha1 chain (34 kDa, Protein from Influenza A virus)
CryoEM structure of A/Perth/16/2009 H3
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ DOI: doi:10.1016/j.immuni.2024.03.022 Pubmed: 38670113 ]
CryoEM map of A/Shanghai/1/2013 H7 HA
Ray R, Nait Mohamed FA, Maurer DP, Huang J, Alpay BA, Ronsard L, Xie Z, Han J, Fernandez-Quintero M, Phan QA, Ursin RL, Vu M, Kirsch KH, Prum T, Rosado VC, Bracamonte-Moreno T, Okonkwo V, Bals J, McCarthy C, Nair U, Kanekiyo M, Ward AB, Schmidt AG, Batista FD, Lingwood D
Immunity (2024) 57 pp. 1141-1159.e11 [ DOI: doi:10.1016/j.immuni.2024.03.022 Pubmed: 38670113 ]
Characterisation of a Seneca Valley Virus Thermostable Mutant
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 8cxp
Q-score: 0.605
Jayawardena N, McCarthy C, Wang I, Waqqar S, Burga LN, Strauss M, Bostina M
Virology (2022) 575 pp. 74-82 [ DOI: doi:10.1016/j.virol.2022.08.015 Pubmed: 36084546 ]
- Vp2 (31 kDa, Protein from Senecavirus A)
- Senecavirus a (Virus from Senecavirus A)
- Capsid protein vp1 (29 kDa, Protein from Senecavirus A)
- Vp4 (7 kDa, Protein from Senecavirus A)
- Capsid protein vp3 (26 kDa, Protein from Senecavirus A)