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Structure of the type III-E CRISPR-Cas effector gRAMP
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7xso
Q-score: 0.553
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ Pubmed: 36306795 DOI: doi:10.1016/j.molcel.2022.10.007 ]
- Rna (35-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Gramp (Complex from Candidatus Scalindua brodae)
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 7xsp
Q-score: 0.554
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ Pubmed: 36306795 DOI: doi:10.1016/j.molcel.2022.10.007 ]
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Gramp-target rna (Complex from Candidatus Scalindua brodae)
- Rna (35-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*g)-3') (12 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
Resolution: 2.88 Å
EM Method: Single-particle
Fitted PDBs: 7xsq
Q-score: 0.496
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ Pubmed: 36306795 DOI: doi:10.1016/j.molcel.2022.10.007 ]
- Craspase (Complex from Candidatus Scalindua brodae)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Ramp superfamily protein, chat domain protein (Complex from Candidatus Scalindua brodae)
- Rna (Complex)
- Zinc ion (65 Da, Ligand)
Structure of Craspase-target RNA
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7xsr
Q-score: 0.52
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ Pubmed: 36306795 DOI: doi:10.1016/j.molcel.2022.10.007 ]
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Rna 34-mer (Complex)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Craspase-target rna (Complex from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*g)-3') (12 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein, chat domain protein (Complex)
- Rna (Complex from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7xss
Q-score: 0.465
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ Pubmed: 36306795 DOI: doi:10.1016/j.molcel.2022.10.007 ]
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*cp*gp*ap*u)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Rna 34-mer (Complex)
- Rna (34-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (Complex from Candidatus Scalindua brodae)
- Rna (Complex)
- Zinc ion (65 Da, Ligand)
- Craspase-ctr complex (Complex from Candidatus Scalindua brodae)
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 7xt4
Q-score: 0.536
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ Pubmed: 36306795 DOI: doi:10.1016/j.molcel.2022.10.007 ]
- Craspase-ntr complex (Complex from Candidatus Scalindua brodae)
- Rna (34-mer) (Complex)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*up*ap*cp*cp*g)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein, chat domain protein (Complex)
- Rna (Complex from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (34-mer) (17 kDa, RNA from Candidatus Scalindua brodae)