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The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric apo state
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8k0p
Q-score: 0.444
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron DR1 at symmetric pre-cleavage state
Resolution: 3.14 Å
EM Method: Single-particle
Fitted PDBs: 8k0q
Q-score: 0.365
Liu ZX, Zhang S, Zhu HZ, Chen ZH, Yang Y, Li LQ, Lei Y, Liu Y, Li DY, Sun A, Li CP, Tan SQ, Wang GL, Shen JY, Jin S, Gao C, Liu JG
Science (2024) 383 pp. eadh4859-eadh4859 [ Pubmed: 38301022 DOI: doi:10.1126/science.adh4859 ]
- The anoxybacillus pushchinoensis orf-less group iic intron hyer1 at symmetric pre-cleavage state (Complex from Anoxybacillus pushchinoensis)
- Magnesium ion (24 Da, Ligand)
- Rna (Complex)
- Dna (Complex)
- Dna (2 kDa, DNA from Anoxybacillus pushchinoensis)
- Rna (542-mer) (205 kDa, RNA from Anoxybacillus pushchinoensis)
The Anoxybacillus pushchinoensis ORF-less Group IIC Intron HYER1 at symmetric post cleavge state
Resolution: 2.65 Å
EM Method: Single-particle
Fitted PDBs: 8k0r
Q-score: 0.356
Liu ZX, Zhang S, Zhu HZ, Chen ZH, Yang Y, Li LQ, Lei Y, Liu Y, Li DY, Sun A, Li CP, Tan SQ, Wang GL, Shen JY, Jin S, Gao C, Liu JG
Science (2024) 383 pp. eadh4859-eadh4859 [ Pubmed: 38301022 DOI: doi:10.1126/science.adh4859 ]
- The anoxybacillus pushchinoensis orf-less group iic intron hyer1 at symmetric post cleavge state (Complex from Anoxybacillus pushchinoensis)
- Magnesium ion (24 Da, Ligand)
- Rna (Complex)
- Rna (542-mer) (205 kDa, RNA from Anoxybacillus pushchinoensis)
- Dna (Complex)
- Dna (1 kDa, DNA from Anoxybacillus pushchinoensis)
The Streptococcus azizii ORF-less Group IIC intron HYER2 at apo state
Resolution: 2.58 Å
EM Method: Single-particle
Fitted PDBs: 8k15
Q-score: 0.563
Liu ZX, Zhang S, Zhu HZ, Chen ZH, Yang Y, Li LQ, Lei Y, Liu Y, Li DY, Sun A, Li CP, Tan SQ, Wang GL, Shen JY, Jin S, Gao C, Liu JG
Science (2024) 383 pp. eadh4859-eadh4859 [ Pubmed: 38301022 DOI: doi:10.1126/science.adh4859 ]
- Magnesium ion (24 Da, Ligand)
- The streptococcus azizii orf-less group iic intron hyer2 at apo state (Complex from Streptococcus azizii)
- Rna (470-mer) (201 kDa, RNA from Streptococcus azizii)
Resolution: 3.41 Å
EM Method: Single-particle
Fitted PDBs: 8k0s
Q-score: 0.298
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 8gk7
Q-score: 0.364
Wang H, Ishchenko A, Skudlarek J, Shen P, Dzhekieva L, Painter RE, Chen YT, Bukhtiyarova M, Leithead A, Tracy R, Babaoglu K, Bahnck-Teets C, Buevich A, Cabalu TD, Labroli M, Lange H, Lei Y, Li W, Liu J, Mann PA, Meng T, Mitchell HJ, Mulhearn J, Scapin G, Sha D, Shaw AW, Si Q, Tong L, Wu C, Wu Z, Xiao JC, Xu M, Zhang LK, McKenney D, Miller RR, Black TA, Cooke A, Balibar CJ, Klein DJ, Raheem I, Walker SS
Nat Microbiol (2024) 9 pp. 1244-1255 [ DOI: doi:10.1038/s41564-024-01667-0 Pubmed: 38649414 ]
- Msba complexed with cerastecin c (450 kDa, Complex from Acinetobacter baumannii)
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- 2-[(4-butylbenzene-1-sulfonyl)amino]-5-[(3-{4-[(4-butylbenzene-1-sulfonyl)amino]-3-carboxyanilino}-3-oxopropyl)carbamoyl]benzoic acid (778 Da, Ligand)
- Lipid a export atp-binding/permease protein msba (66 kDa, Protein from Acinetobacter baumannii)
MDA5 CARDs-MAVS CARD polyUb complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7dni
Q-score: 0.497
Song B, Chen Y, Liu X, Yuan F, Tan EYJ, Lei Y, Song N, Han Y, Pascal BD, Griffin PR, Luo C, Wu B, Luo D, Zheng J
Immunity (2021) 54 pp. 2218- [ DOI: doi:10.1016/j.immuni.2021.09.008 Pubmed: 34644557 ]
- Ubiquitin (8 kDa, Protein from Homo sapiens)
- K63-polyub bound mda5cards-mavscard complex (Complex from Homo sapiens)
- Interferon-induced helicase c domain-containing protein 1 (23 kDa, Protein from Homo sapiens)
- Mitochondrial antiviral-signaling protein (11 kDa, Protein from Homo sapiens)
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7dnj
Q-score: 0.48
Song B, Chen Y, Liu X, Yuan F, Tan EYJ, Lei Y, Song N, Han Y, Pascal BD, Griffin PR, Luo C, Wu B, Luo D, Zheng J
Immunity (2021) 54 pp. 2218- [ DOI: doi:10.1016/j.immuni.2021.09.008 Pubmed: 34644557 ]
- Mda5 cards (Complex)
- Interferon-induced helicase c domain-containing protein 1 (23 kDa, Protein from Homo sapiens)
- K63polyub (Complex from Homo sapiens)
- K63polyub bound mda5 cards complex (Complex from Homo sapiens)
- Ubiquitin (8 kDa, Protein from Homo sapiens)