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Cryo-EM structure of respiratory complex I from Yarrowia lipolytica
Resolution: 4.32 Å
EM Method: Single-particle
Fitted PDBs: 6gcs
Q-score: 0.371
Parey K, Brandt U, Xie H, Mills DJ, Siegmund K, Vonck J, Kuehlbrandt W, Zickermann V
eLife (2018) 7 [ DOI: doi:10.7554/eLife.39213 Pubmed: 30277212 ]
- 49-kda protein (nucm) (52 kDa, Protein from Yarrowia lipolytica)
- Nufm subunit (16 kDa, Protein from Yarrowia lipolytica)
- Ni2m subunit (12 kDa, Protein from Yarrowia lipolytica)
- Ni9m subunit (7 kDa, Protein from Yarrowia lipolytica)
- Nb6m subunit (14 kDa, Protein from Yarrowia lipolytica)
- Nebm subunit (5 kDa, Protein from Yarrowia lipolytica)
- Zinc ion (65 Da, Ligand)
- Nb4m subunit (14 kDa, Protein from Yarrowia lipolytica)
- Psst subunit (nukm) (23 kDa, Protein from Yarrowia lipolytica)
- 30-kda protein (nugm) (32 kDa, Protein from Yarrowia lipolytica)
- Nunm subunit (7 kDa, Protein from Yarrowia lipolytica)
- Niam subunit (8 kDa, Protein from Yarrowia lipolytica)
- Cardiolipin (1 kDa, Ligand)
- Nd6 subunit (nu6m) (20 kDa, Protein from Yarrowia lipolytica)
- Nb2m subunit (6 kDa, Protein from Yarrowia lipolytica)
- Flavin mononucleotide (456 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Nd4l subunit (nulm) (9 kDa, Protein from Yarrowia lipolytica)
- Nimm subunit (9 kDa, Protein from Yarrowia lipolytica)
- Acpm2 subunit (14 kDa, Protein from Yarrowia lipolytica)
- Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
- 1,2-diacyl-sn-glycero-3-phosphoethanolamine (748 Da, Ligand)
- Ni8m subunit (9 kDa, Protein from Yarrowia lipolytica)
- Nuzm subunit (11 kDa, Protein from Yarrowia lipolytica)
- Unknown subunit (4 kDa, Protein from Yarrowia lipolytica)
- Nipm subunit (10 kDa, Protein from Yarrowia lipolytica)
- 24-kda subunit (nuhm) (27 kDa, Protein from Yarrowia lipolytica)
- Acpm1 subunit (12 kDa, Protein from Yarrowia lipolytica)
- Nd3 subunit (nu3m) (14 kDa, Protein from Yarrowia lipolytica)
- 75-kda protein (nuam) (79 kDa, Protein from Yarrowia lipolytica)
- Nupm subunit (19 kDa, Protein from Yarrowia lipolytica)
- Nd4 subunit (nu4m) (54 kDa, Protein from Yarrowia lipolytica)
- Nb5m subunit (10 kDa, Protein from Yarrowia lipolytica)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Mitochondrial nadh:ubiquinone oxidoreductase (963 MDa, Complex from Yarrowia lipolytica)
- Nd1 subunit (nu1m) (38 kDa, Protein from Yarrowia lipolytica)
- Nb8m subunit (11 kDa, Protein from Yarrowia lipolytica)
- Nd5 subunit (nu5m) (73 kDa, Protein from Yarrowia lipolytica)
- Nd2 subunit (nu2m) (53 kDa, Protein from Yarrowia lipolytica)
- Nuym subunit (18 kDa, Protein from Yarrowia lipolytica)
- Numm subunit (15 kDa, Protein from Yarrowia lipolytica)
- Tyky subunit (nuim) (25 kDa, Protein from Yarrowia lipolytica)
- S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
- 51-kda protein (nubm) (53 kDa, Protein from Yarrowia lipolytica)
- Nuxm subunit (18 kDa, Protein from Yarrowia lipolytica)
- Nesm subunit (13 kDa, Protein from Yarrowia lipolytica)
- Nuem subunit (42 kDa, Protein from Yarrowia lipolytica)
- Nuum subunit (3 kDa, Protein from Yarrowia lipolytica)
- Nujm subunit (20 kDa, Protein from Yarrowia lipolytica)
- N7bm subunit (16 kDa, Protein from Yarrowia lipolytica)
- Nidm subunit (11 kDa, Protein from Yarrowia lipolytica)
Cryo-EM structure of respiratory complex I from Yarrowia lipolytica under turnover
Parey K, Brandt U, Xie H, Mills DJ, Siegmund K, Vonck J, Kuehlbrandt W, Zickermann V
eLife (2018) 7 [ DOI: doi:10.7554/eLife.39213 Pubmed: 30277212 ]
- Mitochondrial nadh:ubiquinone oxidoreductase (963 MDa, Complex from Yarrowia lipolytica)
Sousa JS, Mills DJ, Vonck J, Kuehlbrandt W
eLife (2016) 5 pp. e21290- [ DOI: doi:10.7554/eLife.21290 Pubmed: 27830641 ]
- Respirasome (1 MDa, Complex from Bos taurus)
Cryo-EM of bovine respiratory supercomplex
Sousa JS, Mills DJ, Vonck J, Kuehlbrandt W
eLife (2016) 5 pp. e21290- [ DOI: doi:10.7554/eLife.21290 Pubmed: 27830641 ]
- Respirasome (1 MDa, Complex from Bos taurus)
Structure of the type IV pilus machinery from Thermus thermophilus in the closed state
Gold VAM, Salzer R, Averhoff B, Kuehlbrandt W
eLife (2015) 4 [ DOI: doi:10.7554/eLife.07380 Pubmed: 25997099 ]
Structure of the type IV pilus machinery from Thermus thermophilus in the closed state
Gold VAM, Salzer R, Averhoff B, Kuehlbrandt W
eLife (2015) 4 [ DOI: doi:10.7554/eLife.07380 Pubmed: 25997099 ]
Structure of the type IV pilus machinery from Thermus thermophilus in the open state
Gold VAM, Salzer R, Averhoff B, Kuehlbrandt W
eLife (2015) 4 [ DOI: doi:10.7554/eLife.07380 Pubmed: 25997099 ]
Structure of the type IV pilus from Thermus thermophilus
Gold VAM, Salzer R, Averhoff B, Kuehlbrandt W
eLife (2015) 4 [ DOI: doi:10.7554/eLife.07380 Pubmed: 25997099 ]
Sub-tomogram average of a mammalian F-type ATP synthase monomer
Jiko C, Davies KM, Shinzawa-Itoh K, Tani K, Maeda S, Mills DJ, Tsukihara T, Fujiyoshi Y, Kuehlbrandt W, Gerle C
eLife (2015) 4 pp. e06119-e06119 [ Pubmed: 25815585 DOI: doi:10.7554/eLife.06119 ]
- F-type atp synthase (600 kDa, Protein from Bos taurus)
- 2d crystal of bovine f-type atp synthase monomers (600 kDa, Sample)
Electron cryo-microscopy of F420-reducing [NiFe] hydrogenase Frh
Resolution: 3.36 Å
EM Method: Single-particle
Fitted PDBs: 4ci0
Q-score: 0.511
Allegretti M, Mills DJ, McMullan G, Kuehlbrandt W, Vonck J
eLife (2014) 3 pp. e01963-e01963 [ DOI: doi:10.7554/eLife.01963 Pubmed: 24569482 ]
- F420 reducing hydrogenase (1 MDa, Sample)
- F420-reducing hydrogenase, subunit gamma (300 kDa, Protein from Methanothermobacter marburgensis)
- F420-reducing hydrogenase, subunit beta (300 kDa, Protein from Methanothermobacter marburgensis)
- F420-reducing hydrogenase, subunit alpha (440 kDa, Protein from Methanothermobacter marburgensis)