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Prefusion-stabilized SARS-CoV-2 spike protein
Resolution: 3.72 Å
EM Method: Single-particle
Fitted PDBs: 8fez
Q-score: 0.312
Gonzalez KJ, Huang J, Criado MF, Banerjee A, Tompkins S, Mousa JJ, Strauch EM
bioRxiv (2023) [ DOI: doi:10.1101/2023.03.16.532924 Pubmed: 36993551 ]
Complex structure of a small molecule (SPC-14) bound SARS-CoV-2 spike protein, closed state
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 8h3e
Q-score: 0.57
Wang Q, Meng F, Xie Y, Wang W, Meng Y, Li L, Liu T, Qi J, Ni X, Zheng S, Huang J, Huang N
ACS Cent Sci (2023) 9 pp. 252-265 [ DOI: doi:10.1021/acscentsci.2c01190 Pubmed: 36844485 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Complex of sars-cov-2 spike protein and a small molecule (spc-14) (Complex from Severe acute respiratory syndrome coronavirus 2)
- 7-(6-nitro-2,3-dihydroindol-1-yl)-7-oxidanylidene-heptanoic acid (306 Da, Ligand)
- Spike glycoprotein,fibritin (141 kDa, Protein from Tequatrovirus T4)
The local refined map of Omicron spike with bispecific antibody FD01
Resolution: 3.51 Å
EM Method: Single-particle
Fitted PDBs: 7wop
Q-score: 0.318
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- Spike protein s1 (22 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- Gw01 (26 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 16l9 (25 kDa, Protein from Homo sapiens)
- 16l9 and gw01 (Complex from Homo sapiens)
The state 1 of Omicron Spike with bispecific antibody FD01
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7woq
Q-score: 0.322
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- Omicron spike with 16l9 fv (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 16l9 fv (Complex from Homo sapiens)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
The state 2 of Omicron Spike with bispecific antibody FD01
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7wor
Q-score: 0.236
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
The state 3 of Omicron Spike with bispecific antibody FD01
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 7wos
Q-score: 0.235
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
The state 4 of Omicron Spike with bispecific antibody FD01
Resolution: 3.47 Å
EM Method: Single-particle
Fitted PDBs: 7wou
Q-score: 0.24
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
The state 5 of Omicron Spike with bispecific antibody FD01
Resolution: 3.87 Å
EM Method: Single-particle
Fitted PDBs: 7wov
Q-score: 0.185
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- 16l9 fv (25 kDa, Protein from Homo sapiens)
The state 6 of Omicron Spike with bispecific antibody FD01
Resolution: 6.11 Å
EM Method: Single-particle
Fitted PDBs: 7wow
Q-score: 0.102
Wang Y, Zhang X, Ma Y, Wang Y, Zhan W, Zheng Q, Zhang M, Ji P, Liu M, Liu Q, Sun T, Zhu T, Wen Y, Sun L, Zhao J, Wu F, Chen Z, Huang J
Cell Discov (2022) 8 pp. 104- [ Pubmed: 36207299 DOI: doi:10.1038/s41421-022-00463-6 ]
- Spike glycoprotein (142 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Omicron spike with 16l9 and gw01 (Complex)
- Gw01 fv (26 kDa, Protein from Homo sapiens)
- Omicron spike (Complex from Severe acute respiratory syndrome coronavirus 2)
- 16l9 and gw01 (Complex from Homo sapiens)
- 16l9 fv (25 kDa, Protein from Homo sapiens)