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Resolution: 4.7 Å
EM Method: Single-particle
Fitted PDBs: 6uxv
Q-score: 0.322
Han Y, Reyes AA, Malik S, He Y
Nature (2020) 579 pp. 452-455 [ Pubmed: 32188938 DOI: doi:10.1038/s41586-020-2087-1 ]
- Unknown protein (2 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swi/snf chromatin-remodeling complex subunit swi1 (148 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription regulatory protein snf6 (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- Unknown protein (2 kDa, Protein from Saccharomyces cerevisiae S288C)
- Swi/snf chromatin-remodeling complex subunit snf5 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf body module (Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (1 kDa, Protein from Saccharomyces cerevisiae S288C)
- Transcription regulatory protein snf12 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf global transcription activator complex subunit swp82 (7 kDa, Protein from Saccharomyces cerevisiae S288C)
- Transcription regulatory protein snf2 (194 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf complex subunit swi3 (93 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (5 kDa, Protein from Saccharomyces cerevisiae S288C)
SWI/SNF nucleosome complex with ADP-BeFx
Resolution: 8.96 Å
EM Method: Single-particle
Fitted PDBs: 6uxw
Q-score: 0.122
Han Y, Reyes AA, Malik S, He Y
Nature (2020) 579 pp. 452-455 [ Pubmed: 32188938 DOI: doi:10.1038/s41586-020-2087-1 ]
- Swi/snf nucleosome complex with adp-befx (Complex from Saccharomyces cerevisiae)
- Phosphate ion (94 Da, Ligand)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Beryllium trifluoride ion (66 Da, Ligand)
- 601 sequence bottom strand (56 kDa, DNA from synthetic construct)
- Swi/snf chromatin-remodeling complex subunit swi1 (148 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Unknown protein (5 kDa, Protein from Saccharomyces cerevisiae S288C)
- Regulator of ty1 transposition protein 102 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Transcription regulatory protein snf6 (19 kDa, Protein from Saccharomyces cerevisiae S288C)
- 601 sequence top strand (61 kDa, DNA from synthetic construct)
- Transcription regulatory protein snf12 (63 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h3.2 (15 kDa, Protein from Xenopus laevis)
- Actin-like protein arp9 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Swi/snf chromatin-remodeling complex subunit snf5 (102 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Swi/snf global transcription activator complex subunit swp82 (7 kDa, Protein from Saccharomyces cerevisiae S288C)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Transcription regulatory protein snf2 (194 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Actin-related protein 7 (53 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Water (18 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Histone h2a type 1 (13 kDa, Protein from Xenopus laevis)
- Swi/snf complex subunit swi3 (93 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Yeast RNA polymerase III initial transcribing complex
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6cnb
Q-score: 0.355
Han Y, Yan C, Fishbain S, Ivanov I, He Y
Cell Discov (2018) 4 pp. 40-40 [ DOI: doi:10.1038/s41421-018-0044-z Pubmed: 30083386 ]
- Dna-directed rna polymerase iii subunit rpc4 (46 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc8 (24 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7 (27 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc1 (162 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc5 (32 kDa, Protein from Baker's yeast)
- Dna (71-mer) (21 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase iii subunit rpc2 (129 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc3 (74 kDa, Protein from Baker's yeast)
- Transcription factor iiib 70 kda subunit,tata-box-binding protein,transcription factor iiib 70 kda subunit (82 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase iii subunit rpc6 (36 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Baker's yeast)
- Transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'' (66 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast rna polymerase iii initial transcribing complex (900 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase iii subunit rpc9 (18 kDa, Protein from Baker's yeast)
- Dna (71-mer) (21 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Baker's yeast)
Yeast RNA polymerase III open complex
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6cnc
Q-score: 0.361
Han Y, Yan C, Fishbain S, Ivanov I, He Y
Cell Discov (2018) 4 pp. 40-40 [ DOI: doi:10.1038/s41421-018-0044-z Pubmed: 30083386 ]
- Dna-directed rna polymerase iii subunit rpc4 (46 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Baker's yeast)
- Dna (71-mer) (21 kDa, DNA from Saccharomyces cerevisiae S288c)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc8 (24 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7 (27 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc1 (162 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc5 (32 kDa, Protein from Baker's yeast)
- Dna (71-mer) (21 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase iii subunit rpc2 (129 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc3 (74 kDa, Protein from Baker's yeast)
- Transcription factor iiib 70 kda subunit,tata-box-binding protein,transcription factor iiib 70 kda subunit (82 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase iii subunit rpc6 (36 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Baker's yeast)
- Transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'' (66 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast rna polymerase iii open complex (900 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase iii subunit rpc9 (18 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Baker's yeast)
Yeast RNA polymerase III natural open complex (nOC)
Resolution: 4.8 Å
EM Method: Single-particle
Fitted PDBs: 6cnd
Q-score: 0.291
Han Y, Yan C, Fishbain S, Ivanov I, He Y
Cell Discov (2018) 4 pp. 40-40 [ DOI: doi:10.1038/s41421-018-0044-z Pubmed: 30083386 ]
- Dna-directed rna polymerase iii subunit rpc4 (46 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc8 (24 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7 (27 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Baker's yeast)
- Dna (71-mer) (21 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase iii subunit rpc1 (162 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc5 (32 kDa, Protein from Baker's yeast)
- Dna (71-mer) (21 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase iii subunit rpc2 (129 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc3 (74 kDa, Protein from Baker's yeast)
- Transcription factor iiib 70 kda subunit,tata-box-binding protein,transcription factor iiib 70 kda subunit (82 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase iii subunit rpc6 (36 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Baker's yeast)
- Transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'' (66 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Yeast rna polymerase iii natural open complex (noc) (900 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase iii subunit rpc9 (18 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Baker's yeast)
Yeast RNA polymerase III elongation complex
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6cnf
Q-score: 0.295
Han Y, Yan C, Fishbain S, Ivanov I, He Y
Cell Discov (2018) 4 pp. 40-40 [ DOI: doi:10.1038/s41421-018-0044-z Pubmed: 30083386 ]
- Dna-directed rna polymerase iii subunit rpc4 (46 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i and iii subunit rpac2 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (16 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Baker's yeast)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase iii subunit rpc8 (24 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7,dna-directed rna polymerase iii subunit rpc7 (27 kDa, Protein from Baker's yeast)
- Dna (79-mer) (24 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna (79-mer) (24 kDa, DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase iii subunit rpc10 (12 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc1 (162 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc5 (32 kDa, Protein from Baker's yeast)
- Yeast rna polymerase iii elongation complex (900 kDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase iii subunit rpc2 (129 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (17 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerase iii subunit rpc3 (74 kDa, Protein from Baker's yeast)
- Transcription factor iiib 70 kda subunit,tata-box-binding protein,transcription factor iiib 70 kda subunit (82 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase iii subunit rpc6 (36 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (25 kDa, Protein from Baker's yeast)
- Transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'',transcription factor tfiiib component b'' (66 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Dna-directed rna polymerase iii subunit rpc9 (18 kDa, Protein from Baker's yeast)
- Dna-directed rna polymerases i and iii subunit rpac1 (37 kDa, Protein from Baker's yeast)
Yeast RNA polymerase III intermediate open complex (iOC)
Han Y, Yan C, Fishbain S, Ivanov I, He Y
Cell Discov (2018) 4 pp. 40-40 [ DOI: doi:10.1038/s41421-018-0044-z Pubmed: 30083386 ]
Pol I Initial Transcribing Complex with a truncated scaffold at 6.9 angstrom
Han Y, Yan C, Nguyen THD, Jackobel AJ, Ivanov I, Knutson BA, He Y
eLife (2017) 6 [ DOI: doi:10.7554/eLife.27414 Pubmed: 28623663 ]
- Rna (RNA from Saccharomyces cerevisiae S288c)
- Upstream non-template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa12 (Protein from Saccharomyces cerevisiae S288c)
- Template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa49 (Protein from Saccharomyces cerevisiae S288c)
- Rna polymerase i initial transcribing complex with a truncated scaffold (900 kDa, Complex from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa34 (Protein from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn7 (Protein from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn11 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa190 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (Protein from Saccharomyces cerevisiae S288c)
- Downstream non-template strand dna (DNA from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i and iii subunit rpac2 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa135 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (Protein from Saccharomyces cerevisiae S288c)
- Rna polymerase i-specific transcription initiation factor rrn6 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa14 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i and iii subunit rpac1 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (Protein from Saccharomyces cerevisiae S288c)
- Dna-directed rna polymerase i subunit rpa43 (Protein from Saccharomyces cerevisiae S288c)