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Human VPS29/VPS35L Complex (Locally refined map)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8sym
Q-score: 0.446
Human VPS35L/VPS29/VPS26C Complex
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8syn
Q-score: 0.38
Boesch DJ, Singla A, Han Y, Kramer DA, Liu Q, Suzuki K, Juneja P, Zhao X, Long X, Medlyn MJ, Billadeau DD, Chen Z, Chen B, Burstein E
Nat Struct Mol Biol (2023) [ Pubmed: 38062209 DOI: doi:10.1038/s41594-023-01184-4 ]
- Vacuolar protein sorting-associated protein 29 (23 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Trimeric complex of full-length vps35l/vps29/vps26c (Complex from Homo sapiens)
Human Retriever VPS35L/VPS29/VPS26C Complex (Composite Map)
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 8syo
Q-score: 0.429
Boesch DJ, Singla A, Han Y, Kramer DA, Liu Q, Suzuki K, Juneja P, Zhao X, Long X, Medlyn MJ, Billadeau DD, Chen Z, Chen B, Burstein E
Nat Struct Mol Biol (2023) [ Pubmed: 38062209 DOI: doi:10.1038/s41594-023-01184-4 ]
- Vacuolar protein sorting-associated protein 29 (23 kDa, Protein from Homo sapiens)
- Vacuolar protein sorting-associated protein 26c (33 kDa, Protein from Homo sapiens)
- Vps35 endosomal protein-sorting factor-like (109 kDa, Protein from Homo sapiens)
- Trimeric complex of full-length vps35l/vps29/vps26c (Complex from Homo sapiens)
Cryo-EM structure of human NCX1 in apo inactivated state
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8sgj
Q-score: 0.499
Xue J, Zeng W, Han Y, John S, Ottolia M, Jiang Y
Nat Commun (2023) 14 pp. 6181-6181 [ DOI: doi:10.1038/s41467-023-41885-4 Pubmed: 37794011 ]
- Sodium/calcium exchanger 1 (109 kDa, Protein from Homo sapiens)
- Fab light chain (21 kDa, Protein from Mus musculus)
- Human cardiac ncx1 in complex with antibody fab fragment (Complex)
- Antibody fab fragment (Complex from Mus musculus)
- Human cardiac ncx1 in apo inactivated state (Complex from Homo sapiens)
- Sodium ion (22 Da, Ligand)
- Fab heavy chain (26 kDa, Protein from Mus musculus)
- Water (18 Da, Ligand)
- Calcium ion (40 Da, Ligand)
Xue J, Zeng W, Han Y, John S, Ottolia M, Jiang Y
Nat Commun (2023) 14 pp. 6181-6181 [ DOI: doi:10.1038/s41467-023-41885-4 Pubmed: 37794011 ]
- Antibody fab fragment (Complex from Mus musculus)
- Human cardiac sodium calcium exchanger ncx1 in apo, inactivated state ( group i in the presence of 0.5mm ca2+) (Complex from Homo sapiens)
- Human cardiac sodium calcium exchanger ncx1 (Protein from Homo sapiens)
- Human cardiac sodium calcium exchanger ncx1 in apo, inactivated state ( group i in the presence of 0.5mm ca2+) and bound fab fragment (Complex)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8sgt
Q-score: 0.239
Xue J, Zeng W, Han Y, John S, Ottolia M, Jiang Y
Nat Commun (2023) 14 pp. 6181-6181 [ DOI: doi:10.1038/s41467-023-41885-4 Pubmed: 37794011 ]
- Human ncx1 in ca bound, activated state (Complex from Homo sapiens)
- Sodium/calcium exchanger 1 (109 kDa, Protein from Homo sapiens)
- Fab light chain (21 kDa, Protein from Mus musculus)
- Antibody fab fragment (Complex from Mus musculus)
- Human ncx1 in complex with antibody fab fragment (Complex)
- Fab heavy chain (26 kDa, Protein from Mus musculus)
- Calcium ion (40 Da, Ligand)
Cryo-EM structure of mouse agonist ML-SA1-bound TRPML1 channel at 2.32 Angstrom resolution
Resolution: 2.32 Å
EM Method: Single-particle
Fitted PDBs: 7sq6
Q-score: 0.659
Gan N, Han Y, Zeng W, Wang Y, Xue J, Jiang Y
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2120404119 Pubmed: 35131932 ]
- 2-{2-oxo-2-[(4s)-2,2,4-trimethyl-3,4-dihydroquinolin-1(2h)-yl]ethyl}-1h-isoindole-1,3(2h)-dione (362 Da, Ligand)
- Mucolipin-1 (65 kDa, Protein from Mus musculus)
- Sodium ion (22 Da, Ligand)
- Water (18 Da, Ligand)
- Mouse transient receptor potential-mucolipin 1 apo closed state (Complex from Mus musculus)
Cryo-EM structure of mouse PI(3,5)P2-bound TRPML1 channel at 2.41 Angstrom resolution
Resolution: 2.41 Å
EM Method: Single-particle
Fitted PDBs: 7sq7
Q-score: 0.627
Gan N, Han Y, Zeng W, Wang Y, Xue J, Jiang Y
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2120404119 Pubmed: 35131932 ]
- Mucolipin-1 (65 kDa, Protein from Mus musculus)
- Sodium ion (22 Da, Ligand)
- (2r)-3-{[(s)-hydroxy{[(1s,2r,3r,4s,5s,6r)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate (746 Da, Ligand)
- Water (18 Da, Ligand)
- Mouse transient receptor potential-mucolipin 1 apo closed state (Complex from Mus musculus)
Cryo-EM structure of mouse apo TRPML1 channel at 2.598 Angstrom resolution
Resolution: 2.598 Å
EM Method: Single-particle
Fitted PDBs: 7sq8
Q-score: 0.618
Gan N, Han Y, Zeng W, Wang Y, Xue J, Jiang Y
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2120404119 Pubmed: 35131932 ]
- Water (18 Da, Ligand)
- Mucolipin-1 (65 kDa, Protein from Mus musculus)
- Mouse transient receptor potential-mucolipin 1 apo closed state (Complex from Mus musculus)
- Sodium ion (22 Da, Ligand)
Cryo-EM structure of mouse temsirolimus/PI(3,5)P2-bound TRPML1 channel at 2.11 Angstrom resolution
Resolution: 2.11 Å
EM Method: Single-particle
Fitted PDBs: 7sq9
Q-score: 0.69
Gan N, Han Y, Zeng W, Wang Y, Xue J, Jiang Y
PNAS (2022) 119 [ DOI: doi:10.1073/pnas.2120404119 Pubmed: 35131932 ]
- Mucolipin-1 (65 kDa, Protein from Mus musculus)
- (1r,2r,4s)-4-{(2r)-2-[(3s,6r,7e,9r,10r,12r,14s,15e,17e,19e,21s,23s,26r,27r,30s,34as)-9,27-dihydroxy-10,21-dimethoxy-6,8,12,14,20,26-hexamethyl-1,5,11,28,29-pentaoxo-1,4,5,6,9,10,11,12,13,14,21,22,23,24,25,26,27,28,29,31,32,33,34,34a-tetracosahydro-3h-23,27-epoxypyrido[2,1-c][1,4]oxazacyclohentriacontin-3-yl]propyl}-2-methoxycyclohexyl 3-hydroxy-2-(hydroxymethyl)-2-methylpropanoate (1 kDa, Ligand)
- Sodium ion (22 Da, Ligand)
- (2r)-3-{[(s)-hydroxy{[(1s,2r,3r,4s,5s,6r)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate (746 Da, Ligand)
- Water (18 Da, Ligand)
- Mouse transient receptor potential-mucolipin 1 apo closed state (Complex from Mus musculus)