Do data resources managed by EMBL-EBI and our collaborators make a difference to your work? Please take 10 minutes to fill in our annual user survey, and help us make the case for why sustaining open data resources is critical for life sciences research. We appreciate your responses prior to closing of the survey on Monday 17th June.
Cryo-EM structures of Alphacoronavirus spike glycoprotein
Resolution: 3.21 Å
EM Method: Single-particle
Fitted PDBs: 7cyc
Q-score: 0.424
Song X, Shi Y, Ding W, Niu T, Sun L, Tan Y, Chen Y, Shi J, Xiong Q, Huang X, Xiao S, Zhu Y, Cheng C, Fu ZF, Liu ZJ, Peng G
Nat Commun (2021) 12 pp. 141-141 [ Pubmed: 33420048 DOI: doi:10.1038/s41467-020-20401-y ]
- Hcov-229e spike trimer (Complex from Human coronavirus 229E)
- Spike glycoprotein (122 kDa, Protein from Human coronavirus 229E)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structures of Alphacoronavirus spike glycoprotein
Resolution: 3.55 Å
EM Method: Single-particle
Fitted PDBs: 7cyd
Q-score: 0.361
Song X, Shi Y, Ding W, Niu T, Sun L, Tan Y, Chen Y, Shi J, Xiong Q, Huang X, Xiao S, Zhu Y, Cheng C, Fu ZF, Liu ZJ, Peng G
Nat Commun (2021) 12 pp. 141-141 [ Pubmed: 33420048 DOI: doi:10.1038/s41467-020-20401-y ]
- Hcov-229e spike trimer (Complex from Human coronavirus 229E)
- Spike glycoprotein (122 kDa, Protein from Human coronavirus 229E)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of the human glucagon-like peptide-2 receptor-Gs protein complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7d68
Q-score: 0.524
Sun W, Chen LN, Zhou Q, Zhao LH, Yang D, Zhang H, Cong Z, Shen DD, Zhao F, Zhou F, Cai X, Chen Y, Zhou Y, Gadgaard S, van der Velden WJC, Zhao S, Jiang Y, Rosenkilde MM, Xu HE, Zhang Y, Wang MW
Cell Res (2020) 30 pp. 1098-1108 [ Pubmed: 33239759 DOI: doi:10.1038/s41422-020-00442-0 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (40 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
- Cryo-em structure of the human glucagon-like peptide-2 receptor-gs protein complex (Complex)
- Nanobody-35 (Complex from synthetic construct)
- Nanobody-35 (13 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(s) subunit alpha isoforms short (43 kDa, Protein from Bos taurus)
- Pro-glucagon (3 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Guanine nucleotide-binding protein (Complex from Bos taurus)
- Glucagon-like peptide 2 receptor (Complex from Homo sapiens)
- Glucagon-like peptide 2 receptor (75 kDa, Protein from Homo sapiens)
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 7cyq
Q-score: 0.384
Yan L, Ge J, Zheng L, Zhang Y, Gao Y, Wang T, Huang Y, Yang Y, Gao S, Li M, Liu Z, Wang H, Li Y, Chen Y, Guddat LW, Wang Q, Rao Z, Lou Z
Cell (2021) 184 pp. 184-193.e10 [ DOI: doi:10.1016/j.cell.2020.11.016 Pubmed: 33232691 ]
- Primer (10 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
- Sars-cov-2 extended rtc (Complex)
- Non-structural protein 9 (12 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Helicase (66 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Nsp7, nsp8, nsp9, nsp12 and nsp13 (Complex from Severe acute respiratory syndrome coronavirus 2)
- Non-structural protein 7 (9 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Rna (Complex from Severe acute respiratory syndrome coronavirus 2)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Non-structural protein 8 (21 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Magnesium ion (24 Da, Ligand)
- Rna-directed rna polymerase (108 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- Zinc ion (65 Da, Ligand)
- Template (18 kDa, RNA from Severe acute respiratory syndrome coronavirus 2)
Cryo-EM structure of apo MlaFEDB
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6zy2
Q-score: 0.379
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
- Mlafedb (Complex)
- Yrbd protein (Complex from Escherichia coli B185)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
Cryo-EM structure of MlaFEDB in complex with phospholipid
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6zy3
Q-score: 0.431
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine (744 Da, Ligand)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
- Mlafedb (Complex)
- Yrbd protein (Complex from Escherichia coli B185)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
Cryo-EM structure of MlaFEDB in complex with ADP
Resolution: 4.1 Å
EM Method: Single-particle
Fitted PDBs: 6zy4
Q-score: 0.249
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Mlafedb (Complex)
- Yrbd protein (Complex from Escherichia coli B185)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
Cryo-EM structure of MlaFEDB in complex with AMP-PNP
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 6zy9
Q-score: 0.374
Tang X, Chang S, Qiao W, Luo Q, Chen Y, Jia Z, Coleman J, Zhang K, Wang T, Zhang Z, Zhang C, Zhu X, Wei X, Dong C, Zhang X, Dong H
Nat Struct Mol Biol (2021) 28 pp. 81-91 [ Pubmed: 33199922 DOI: doi:10.1038/s41594-020-00532-y ]
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Toluene tolerance protein ttg2a (Complex from Escherichia coli 909945-2)
- Yrbd protein (19 kDa, Protein from Escherichia coli B185)
- Uncharacterized protein (27 kDa, Protein from Escherichia coli 2.3916)
- Mlafedb (Complex)
- Yrbd protein (Complex from Escherichia coli B185)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (11 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Uncharacterized protein (Complex from Escherichia coli 2.3916)
- Toluene tolerance protein ttg2a (29 kDa, Protein from Escherichia coli 909945-2)
- Abc transporter maintaining om lipid asymmetry, cytoplasmic stas component (Complex from Escherichia coli)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6m1y
Q-score: 0.494
Chi X, Li X, Chen Y, Zhang Y, Su Q, Zhou Q
Cell Res (2021) 31 pp. 482-484 [ Pubmed: 33199848 DOI: doi:10.1038/s41422-020-00437-x ]
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Chloride ion (35 Da, Ligand)
- Solute carrier family 12 member 6 (123 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- Kcc3 (Complex from Homo sapiens)