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Cryo-EM structure of HflXr bound to the Listeria monocytogenes 50S ribosomal subunit.
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8a57
Q-score: 0.579
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ Pubmed: 36300626 DOI: doi:10.1093/nar/gkac934 ]
- 50s ribosomal protein l6 (19 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l15 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l34 (5 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l2 (30 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l20 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l19 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Spermidine (145 Da, Ligand)
- 50s ribosomal protein l21 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l23 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l32-2 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l18 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l5 (20 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l11 (14 kDa, Protein from Listeria monocytogenes EGD-e)
- Gtpase hflx (47 kDa, Protein from Listeria monocytogenes EGD-e)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l36 (4 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l22 (12 kDa, Protein from Listeria monocytogenes EGD-e)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Hflxr bound to the listeria monocytogenes 50s ribosomal subunit (1 MDa, Complex from Listeria monocytogenes E)
- 50s ribosomal protein l29 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l30 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l16 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l13 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l24 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 23s ribosomal rna (950 kDa, RNA from Listeria monocytogenes EGD-e)
- 5s ribosomal rna (36 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l14 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l3 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l27 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l28 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l17 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l35 (7 kDa, Protein from Listeria monocytogenes EGD-e)
Cryo-EM structure of Lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8a5i
Q-score: 0.638
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ Pubmed: 36300626 DOI: doi:10.1093/nar/gkac934 ]
- Lincomycin bound to the listeria monocytogenes 50s ribosomal subunit. (1 MDa, Complex from Listeria monocytogenes E)
- 50s ribosomal protein l6 (19 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l15 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l34 (5 kDa, Protein from Listeria monocytogenes EGD-e)
- Lincomycin (406 Da, Ligand)
- 50s ribosomal protein l2 (30 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l20 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l19 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Spermidine (145 Da, Ligand)
- 50s ribosomal protein l21 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l23 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l32-2 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l18 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l5 (20 kDa, Protein from Listeria monocytogenes EGD-e)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l36 (4 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l22 (12 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l29 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l30 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l16 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l13 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l24 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 23s ribosomal rna (950 kDa, RNA from Listeria monocytogenes EGD-e)
- 5s ribosomal rna (36 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l14 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l3 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l27 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- Water (18 Da, Ligand)
- 50s ribosomal protein l28 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l17 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l35 (7 kDa, Protein from Listeria monocytogenes EGD-e)
Cryo-EM structure of Listeria monocytogenes 50S ribosomal subunit.
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8a63
Q-score: 0.503
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ Pubmed: 36300626 DOI: doi:10.1093/nar/gkac934 ]
- 50s ribosomal protein l6 (19 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l15 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l34 (5 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l2 (30 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l20 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l19 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- Spermidine (145 Da, Ligand)
- 50s ribosomal protein l21 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l23 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l32-2 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l18 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l5 (20 kDa, Protein from Listeria monocytogenes EGD-e)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l36 (4 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l22 (12 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l29 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- Listeria monocytogenes 50s ribosomal subunit. (1 MDa, Complex from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l30 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l4 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l16 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l13 (16 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l24 (11 kDa, Protein from Listeria monocytogenes EGD-e)
- 23s ribosomal rna (950 kDa, RNA from Listeria monocytogenes EGD-e)
- 5s ribosomal rna (36 kDa, RNA from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l14 (13 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l3 (22 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l27 (10 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l28 (7 kDa, Protein from Listeria monocytogenes EGD-e)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l17 (15 kDa, Protein from Listeria monocytogenes EGD-e)
- 50s ribosomal protein l35 (7 kDa, Protein from Listeria monocytogenes EGD-e)
Cryo-EM volume of HflX bound to the Listeria monocytogenes 50S ribosomal subunit
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ Pubmed: 36300626 DOI: doi:10.1093/nar/gkac934 ]
Cryo-EM map of lincomycin bound to the Listeria monocytogenes 50S ribosomal subunit.
Koller TO, Turnbull KJ, Vaitkevicius K, Crowe-McAuliffe C, Roghanian M, Bulvas O, Nakamoto JA, Kurata T, Julius C, Atkinson GC, Johansson J, Hauryliuk V, Wilson DN
Nucleic Acids Res (2022) 50 pp. 11285-11300 [ Pubmed: 36300626 DOI: doi:10.1093/nar/gkac934 ]