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Chloroplast Ribosome, collected with pixel size 1.06
Forsberg BO, Aibara S, Kimanius D, Paul B, Lindahl E, Amunts A
IUCrJ (2017) 4 pp. 723-727 [ Pubmed: 29123673 DOI: doi:10.1107/S205225251701226X ]
Chloroplast Ribosome, collected with pixel size 1.39
Forsberg BO, Aibara S, Kimanius D, Paul B, Lindahl E, Amunts A
IUCrJ (2017) 4 pp. 723-727 [ Pubmed: 29123673 DOI: doi:10.1107/S205225251701226X ]
Chloroplast Ribosome, calculated from 20k rescaled particles
Forsberg BO, Aibara S, Kimanius D, Paul B, Lindahl E, Amunts A
IUCrJ (2017) 4 pp. 723-727 [ Pubmed: 29123673 DOI: doi:10.1107/S205225251701226X ]
The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus
Resolution: 6.76 Å
EM Method: Single-particle
Fitted PDBs: 6fxc
Q-score: 0.141
Matzov D, Aibara S, Basu A, Zimmerman E, Bashan A, Yap MF, Amunts A, Yonath AE
Nat Commun (2017) 8 pp. 723-723 [ Pubmed: 28959035 DOI: doi:10.1038/s41467-017-00753-8 ]
- 30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s16 (9 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal proteins (Complex from Staphylococcus aureus)
- 16s ribosomal rna (502 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s3 (22 kDa, Protein from Staphylococcus aureus)
- 30s subunit (Complex from Staphylococcus aureus)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
- Ribosome hibernation promotion factor (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l5 (19 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l32 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus)
- 23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s19 (9 kDa, Protein from Staphylococcus aureus)
- 16s rrna (Complex from Staphylococcus aureus)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s2 (25 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus)
- 50s subunit (Complex from Staphylococcus aureus)
- 100s complex of staphylococcus aureus (Complex from Staphylococcus aureus)
- 30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l31 type b (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal proteins (Complex from Staphylococcus aureus)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
- 23s and 5s rrna (Complex from Staphylococcus aureus)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 5ngm
Q-score: 0.452
Matzov D, Aibara S, Basu A, Zimmerman E, Bashan A, Yap MF, Amunts A, Yonath AE
Nat Commun (2017) 8 pp. 723-723 [ Pubmed: 28959035 DOI: doi:10.1038/s41467-017-00753-8 ]
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal proteins (Complex from Staphylococcus aureus)
- 16s ribosomal rna (502 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus)
- 30s subunit (Complex from Staphylococcus aureus)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
- 16s rrna (Complex from Staphylococcus aureus)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus)
- 23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus)
- 70s ribosome of the s. aureus 100s complex (Complex from Staphylococcus aureus)
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus)
- Ribosome hibernation promoting factor (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus)
- 50s subunit (Complex from Staphylococcus aureus)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal proteins (Complex from Staphylococcus aureus)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
- Magnesium ion (24 Da, Ligand)
- 23s and 5s rrna (Complex from Staphylococcus aureus)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus)
Resolution: 3.06 Å
EM Method: Single-particle
Fitted PDBs: 5ool
Q-score: 0.293
Brown A, Rathore S, Kimanius D, Aibara S, Bai XC, Rorbach J, Amunts A, Ramakrishnan V
Nat Struct Mol Biol (2017) 24 pp. 866-869 [ Pubmed: 28892042 DOI: doi:10.1038/nsmb.3464 ]
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Human)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Human)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Human)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Human)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Human)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Human)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Human)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Human)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Human)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Human)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Human)
- Mitochondrial trnaval (22 kDa, RNA from Human)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Human)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Human)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Human)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Human)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Human)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Human)
- Mitochondrial assembly of ribosomal large subunit protein 1 (26 kDa, Protein from Human)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Human)
- Mief1 upstream open reading frame protein (8 kDa, Protein from Human)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Human)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Human)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Human)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Human)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Human)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Human)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Human)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Human)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Human)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Human)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Human)
- Mitochondrial ribosome large subunit with assembly factor (Cellular component from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Human)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Human)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Human)
- 16s ribosomal rna (500 kDa, RNA from Human)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Human)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Human)
- 4'-phosphopantetheine (358 Da, Ligand)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Human)
- Unknown protein or protein extension (2 kDa, Protein from Human)
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 5oom
Q-score: 0.29
Brown A, Rathore S, Kimanius D, Aibara S, Bai XC, Rorbach J, Amunts A, Ramakrishnan V
Nat Struct Mol Biol (2017) 24 pp. 866-869 [ Pubmed: 28892042 DOI: doi:10.1038/nsmb.3464 ]
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Human)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Human)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Human)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Human)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Human)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Human)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Human)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Human)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Human)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Human)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Human)
- Mitochondrial trnaval (22 kDa, RNA from Human)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Human)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Human)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Human)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Human)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Human)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Human)
- Mitochondrial assembly of ribosomal large subunit protein 1 (26 kDa, Protein from Human)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Human)
- Mief1 upstream open reading frame protein (8 kDa, Protein from Human)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Human)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Human)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Human)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Human)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Human)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Human)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Human)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Human)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Human)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Human)
- Mitochondrial ribosome large subunit with assembly factor (Cellular component from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Human)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Human)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Human)
- 16s ribosomal rna (500 kDa, RNA from Human)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Human)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Human)
- 4'-phosphopantetheine (358 Da, Ligand)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Human)
- Unknown protein or protein extension (2 kDa, Protein from Human)
Yeast mitochondrial ribosome - small subunit head (fitted to EMD 3551)
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
Yeast mitochondrial ribosome - small subunit body (fitted to EMD 3551)
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]
Yeast mitochondrial ribosome - large subunit (fitted to EMD 3551)
Desai N, Brown A, Amunts A, Ramakrishnan V
Science (2017) 355 pp. 528-531 [ Pubmed: 28154081 DOI: doi:10.1126/science.aal2415 ]