- Course overview
- Search within this course
- How to take this course
- Introduction to Ensembl
- Ensembl genes and transcripts
- Variation data in Ensembl and the Ensembl VEP
- Comparing genes and genomes with Ensembl Compara
- Finding features that regulate genes – the Ensembl Regulatory Build
- Data export with BioMart
- Visualising your data in Ensembl
- Your feedback
- Get help and support on Ensembl
- References
All materials are free cultural works licensed under a Creative Commons Attribution 4.0 International (CC BY 4.0) license, except where further licensing details are provided.
References
- Harrison P.W., et al. (2024) Ensembl 2024. Nucleic Acids Res. 52(D1):D891-D899.
- Martin F.J., et al. (2023) Ensembl 2023. Nucleic Acids Res. 51(D1):D933-D941.
- Cunningham F., et al. (2022) Ensembl 2022. Nucleic Acids Res. 50(D1):D988-D995.
- Yates A., et al. (2022) Ensembl Genomes 2022: an expanding genome resource for non-vertebrates. Nucleic Acids Res. 50(D1):D996-D1003.
- Howe K.L., et al. (2021) Ensembl 2021. Nucleic Acids Res. 49(D1):D884-D891.
- Yates A., et al. (2020) Ensembl 2020. Nucleic Acids Res. 48(D1) D682-D688.
- Howe KL., et al. (2019) Ensembl Genomes 2020-enabling non-vertebrate genomic research. Nucleic Acids Res. 48(D1) D689-D695.
- Kinsella RJ., et al. (2011) Ensembl BioMarts: a hub for data retrieval across taxonomic space. Database (Oxford). 2011;2011 bar030.
- Hunt S., et al. (2018) Ensembl variation resources. Database : the Journal of Biological Databases and Curation, 01 Jan 2018, 2018
- McLaren W., et al. (2016) The Ensembl Variant Effect Predictor. Genome Biology. 17(1):122.
- Vilella AJ., et al. (2016) Ensembl comparative genomics resources. Database : the Journal of Biological Databases and Curation, 20 Feb 2016.
- Zerbino DR., et al. (2015) The Ensembl regulatory build. Genome Biol. 16(1) 56.
- Yates A., et al. (2015) The Ensembl REST API: Ensembl Data for Any Language. Bioinformatics. 31(1) 143-145.