Ligand clusters for UniProt code P31013

Ligand clusters for P31013: Tyrosine phenol-lyase from Citrobacter freundii

		Top 6 (of 17) ligand clusters Cluster 1. 12 ligand types 28 ligands Cluster 2. 9 ligand types 13 ligands Cluster 3. 3 ligand types 8 ligands Cluster 4. 3 ligand types 3 ligands Cluster 5. 2 ligand types 2 ligands Cluster 6. 2 ligand types 5 ligands
Representative protein: 2ez2A

Structures

PDB		Schematic diagram
2ez2A
2yctA
2vlhA
2ycpA
2vlfA
		more ...

Cluster 1 contains 12 ligand types

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Ligand		Description
		1. Ligand: PLP × 2 pyridoxal phosphate Pyridoxal-5'-Phosphate PDB codes: 2yct(A), 2yhk(A).
		2. Ligand: PO4 × 1 Phosphate ion PDB code: 2ez2(A).
		3. Ligand: SO4 × 1 Sulfate ion PDB code: 1tpl(A).
		4. Ligand: 0JO × 6 2-{[(E)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4-Yl}methylidene]amino}prop-2- Enoic acid PDB codes: 6mls(A), 6mme(A), 6mo3(A), 6mpd(A), 6mqq(A), 6nv8(A).
		5. Ligand: CQG × 6 Pyridin-4-Ol PDB codes: 6mls(A), 6mme(A), 6mo3(A), 6mpd(A), 6mqq(A), 6nv8(A).
		6. Ligand: P61 × 3 (2e)-3-(3-Fluoro-4-Hydroxyphenyl)-2-{[(Z)-{3-Hydroxy-2- Methyl-5-[(Phosphonooxy)methyl]pyridin- 4(1h)- Ylidene}methyl]imino}propanoic acid PDB codes: 2ycn(A), 2ycp(A), 6dz5(A).
		7. Ligand: P71 × 2 (2e)-2-{[(Z)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4(1h)-Ylidene}methyl]imino}-3- Phenylpropanoic acid PDB codes: 6dur(A), 6dvx(A).
		8. Ligand: PLI × 2 (2e)-2-{[(Z)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4(1h)- Ylidene}methyl]imino}propanoic acid PDB codes: 2vlf(A), 2yct(A).
		9. Ligand: PM9 × 2 (2e)-2-{[(Z)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4(1h)-Ylidene}methyl]imino}-4- (Methylsulfanyl)butanoic acid PDB codes: 2vlh(A), 6ecg(A).
		10. Ligand: PO4 × 1 Phosphate ion PDB code: 2yct(A).
		11. Ligand: 9PO × 1 Pyridine-N-Oxide PDB code: 2yct(A).
		12. Ligand: F0G × 1 (E)-N-({3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4-Yl}methylidene)-L-Alanine PDB code: 6dyt(A).

Cluster 2 contains 9 ligand types

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Ligand		Description
		1. Ligand: HPP × 1 Hydroxyphenyl propionic acid PDB code: 2tpl(A).
		2. Ligand: P61 × 3 (2e)-3-(3-Fluoro-4-Hydroxyphenyl)-2-{[(Z)-{3-Hydroxy-2- Methyl-5-[(Phosphonooxy)methyl]pyridin- 4(1h)- Ylidene}methyl]imino}propanoic acid PDB codes: 2ycn(A), 2ycp(A), 6dz5(A).
		3. Ligand: 0JO × 2 2-{[(E)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4-Yl}methylidene]amino}prop-2- Enoic acid PDB codes: 6mme(A), 6mqq(A).
		4. Ligand: P70 × 2 (E)-N-({3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4-Yl}methylidene)-L-Phenylalanine PDB codes: 6dur(A), 6dvx(A).
		5. Ligand: DHA × 1 2-Amino-Acrylic acid PDB code: 6nv8(A).
		6. Ligand: PLI × 1 (2e)-2-{[(Z)-{3-Hydroxy-2-Methyl-5-[(Phosphonooxy) methyl]pyridin-4(1h)- Ylidene}methyl]imino}propanoic acid PDB code: 2vlf(A).
		7. Ligand: PP3 × 1 Alanyl-Pyridoxal-5'-Phosphate PDB code: 6dyt(A).
		8. Ligand: SER × 1 PDB code: 6mo3(A).
		9. Ligand: YOF × 1 3-Fluorotyrosine PDB code: 6mpd(A).

Cluster 3 contains 3 ligand types

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Ligand		Description
		1. Ligand: P33 × 6 3,6,9,12,15,18-Hexaoxaicosane-1,20-Diol PDB codes: 2vlh(A), 2ycp(A), 6dur(A), 6dvx(A), 6dz5(A), 6ecg(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 2ycn(A).
		3. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 2ycn(A).

Cluster 4 contains 3 ligand types

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Ligand		Description
		1. Ligand: SO4 × 1 Sulfate ion PDB code: 1tpl(A).
		2. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 2ycp(A).
		3. Ligand: PGE × 1 Triethylene glycol PDB code: 2vlf(A).

Cluster 5 contains 2 ligand types

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Ligand		Description
		1. Ligand: PG4 × 1 Tetraethylene glycol PDB code: 2ycp(A).
		2. Ligand: PGE × 1 Triethylene glycol PDB code: 2ycp(A).

Cluster 6 contains 2 ligand types

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Ligand		Description
		1. Ligand: PGE × 4 Triethylene glycol PDB codes: 2vlh(A), 2ycp(A), 6dur(A), 6ecg(A).
		2. Ligand: PEG × 1 Di(hydroxyethyl)ether PDB code: 2yhk(A).