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EBI Databases Structure Databases PDBsum

Ligand clusters for UniProt code P00722

Ligand clusters for P00722: Beta-galactosidase from Escherichia coli (strain K12)

Top 6 (of 63) ligand clusters
Cluster 1.
25 ligand types
102 ligands
 Cluster 2.
2 ligand types
4 ligands
 Cluster 3.
2 ligand types
55 ligands
 Cluster 4.
2 ligand types
34 ligands
 Cluster 5.
2 ligand types
14 ligands
 Cluster 6.
1 ligand type
2 ligands
Representative protein: 3j7hA  
JSmol
 

Structures

PDB   Schematic diagram
3j7hA    
6tteA    
6tshA    
3vdaA    
6cvmA    
 more ...

 

 Cluster 1 contains 25 ligand types (of which only 20 are listed. Click for all)

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Ligand Description

_Mg
 
1. Metal: _MG × 23
PDB codes: 1dp0(A), 1f4a(A), 1f4h(A), 1hn1(A), 1jz6(A), 1px3(A), 3dym(A), 3dyp(A), 3i3e(A), 3iaq(A), 3j7h(A), 3muy(1), 3mv1(1), 3sep(A), 3t0a(A), 3t2o(A), 3vd3(A), 3vd5(A), 3vd7(A), 3vda(A), 5a1a(A), 6cvm(A).


 
2. Ligand: DMS × 12
dimethyl sulfoxide
Dimethyl sulfoxide
PDB codes: 1jz3(A), 1jz7(A), 1jz8(A), 3czj(A), 3muy(1), 3mv0(1), 3mv1(1), 3t09(A), 3t0d(A), 3vd3(A), 3vdb(A), 7brs(A).


 
3. Ligand: GAL × 3
galactose
Beta-D-Galactopyranose
PDB codes: 1jz7(A), 3e1f(1),


 
4. Ligand: DGJ × 1
migalastat
(2r,3s,4r,5s)-2-(Hydroxymethyl)piperidine-3,4,5-Triol
PDB code: 6tsh(A).


 
5. Ligand: GAI × 1
guanidine
Guanidine
PDB code: 3mv1(1).


 
6. Ligand: 2DG × 2
2-Deoxy-Alpha-D-Galactopyranose
PDB codes: 1jz3(A), 1jz4(A).


 
7. Ligand: 149 × 1
D-Galactonolactone
PDB code: 1jz5(A).


 
8. Ligand: 2FG × 1
2-Deoxy-2-Fluoro-Beta-D-Galactopyranose
PDB code: 1jz2(A).


 
9. Ligand: IPT × 2
1-Methylethyl 1-Thio-Beta-D-Galactopyranoside
PDB codes: 1jyx(A), 1px4(A).


 
10. Ligand: GTZ × 1
(5r, 6s, 7s, 8s)-5-Hydroxymethyl-6,7,8-Trihydroxy- Tetrazolo[1,5-A]piperidine
PDB code: 1jz6(A).


 
11. Ligand: 145 × 2
2-Nitrophenyl beta-D-Galactopyranoside
PDB codes: 1jyv(A),


 
12. Ligand: 147 × 1
4-Nitrophenyl beta-D-Galactopyranoside
PDB code: 1jyw(A).


 
13. Ligand: BTB × 1
2-[Bis-(2-Hydroxy-Ethyl)-Amino]-2-Hydroxymethyl- Propane-1,3-Diol
PDB code: 1jz3(A).

_Na
 
14. Metal: _NA × 21
PDB codes: 1dp0(A), 1hn1(A), 1jz6(A), 1px3(A), 3dym(A), 3dyp(A), 3i3e(A), 3iap(A), 3iaq(A), 3muy(1), 3mv1(1), 3sep(A), 3t0a(A), 3t2o(A), 3vd3(A), 3vd5(A), 3vd7(A), 3vda(A), 5a1a(A), 6cvm(A).


 
15. Ligand: IPT × 8
1-Methylethyl 1-Thio-Beta-D-Galactopyranoside
PDB codes: 3dyo(A), 3muz(1), 3t08(A), 3t0b(A), 3t2p(A), 3vd4(A), 3vd9(A), 3vdc(A).


 
16. Ligand: 149 × 6
D-Galactonolactone
PDB codes: 3czj(A), 3mv0(1), 3t09(A), 3t0d(A), 3t2q(A), 3vdb(A).


 
17. Ligand: BTB × 3
2-[Bis-(2-Hydroxy-Ethyl)-Amino]-2-Hydroxymethyl- Propane-1,3-Diol
PDB codes: 3iap(A), 3iaq(A), 4duv(A).


 
18. Ligand: 2DG × 1
2-Deoxy-Alpha-D-Galactopyranose
PDB code: 4duv(A).


 
19. Ligand: BGC-GAL × 3
BGC=Beta-D-Glucopyranose, GAL=Beta-D-Galactopyranose.
PDB codes: 1jyn(A), 1jz8(A), 4duw(A).


 
20. Ligand: PTQ × 3
2-Phenylethyl 1-Thio-Beta-D-Galactopyranoside
PDB codes: 5a1a(A), 6cvm(A), 6tte(A).

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 Cluster 2 contains 2 ligand types

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Ligand Description


 
1. Ligand: 145 × 1
2-Nitrophenyl beta-D-Galactopyranoside
PDB code: 1jyv(A).


 
2. Ligand: BTB × 3
2-[Bis-(2-Hydroxy-Ethyl)-Amino]-2-Hydroxymethyl- Propane-1,3-Diol
PDB codes: 1jz2(A), 1jz3(A), 4duv(A).

 

 Cluster 3 contains 2 ligand types

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Ligand Description


 
1. Ligand: DMS × 52
dimethyl sulfoxide
Dimethyl sulfoxide
PDB codes: 1dp0(A), 1jyn(A), 1jyv(A), 1jyw(A), 1jyx(A), 1jz2(A), 1jz3(A), 1jz4(A), 1jz5(A), 1jz6(A), 1jz7(A), 1jz8(A), 1px3(A), 1px4(A), 3czj(A), 3dym(A), 3dyo(A), 3dyp(A), 3e1f(1), 3i3e(A), 3iap(A), 3iaq(A), 3muy(1), 3muz(1), 3mv0(1), 3mv1(1), 3sep(A), 3t08(A), 3t09(A), 3t0a(A), 3t0b(A), 3t0d(A), 3t2o(A), 3t2p(A), 3t2q(A), 3vd3(A), 3vd4(A), 3vd5(A), 3vd7(A), 3vd9(A), 3vda(A), 3vdb(A), 3vdc(A), 4duv(A), 4duw(A), 4dux(A), 6kuz(A), 7btk(A).


 
2. Ligand: IPT × 3
1-Methylethyl 1-Thio-Beta-D-Galactopyranoside
PDB codes: 1jyx(A), 3dyo(A), 3muz(1).

 

 Cluster 4 contains 2 ligand types

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Ligand Description


 
1. Ligand: DMS × 33
dimethyl sulfoxide
Dimethyl sulfoxide
PDB codes: 1dp0(A), 1jyn(A), 1jyv(A), 1jyw(A), 1jyx(A), 1jz2(A), 1jz3(A), 1jz4(A), 1jz5(A), 1jz6(A), 1jz7(A), 1jz8(A), 1px4(A), 3czj(A), 3dyo(A), 3dyp(A), 3i3e(A), 3iap(A), 3iaq(A), 3muy(1), 3muz(1), 3mv0(1), 3mv1(1), 3sep(A), 3t08(A), 3t09(A), 3t0a(A), 3t0b(A), 3t0d(A), 3t2o(A), 3vd3(A), 3vd4(A), 3vdb(A).


 
2. Ligand: IPT × 1
1-Methylethyl 1-Thio-Beta-D-Galactopyranoside
PDB code: 3dyo(A).

 

 Cluster 5 contains 2 ligand types

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Ligand Description


 
1. Ligand: DMS × 13
dimethyl sulfoxide
Dimethyl sulfoxide
PDB codes: 1jz8(A), 3i3e(A), 3iap(A), 3iaq(A), 3muz(1), 3mv1(1), 3sep(A), 3t0d(A), 3vd4(A), 3vd9(A), 4duv(A), 4duw(A), 7brs(A).


 
2. Ligand: IPT × 1
1-Methylethyl 1-Thio-Beta-D-Galactopyranoside
PDB code: 3dyo(A).

 

 Cluster 6 contains 1 ligand type

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Ligand Description


 
1. Ligand: IPT × 2
1-Methylethyl 1-Thio-Beta-D-Galactopyranoside
PDB codes: 3dyo(A), 3muz(1).

 

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