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Goldman Group

Evolutionary tools for genomic analysis

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RATS: Resource Aware Taxon Selection
HMMs of Protein Structure & Evolution
Statistical Tests of Phylogenies
Phylogenetic Information
WAG Matrix for Amino Acid Replacement
PANDIT Database of Alignments and Phylogenies
Almost Invariant Sets Method for Classifying Amino Acids
Different versions of the Dayhoff rate matrix
ECM: Empirical Codon Models
Probabilistic Progressive Multiple Alignment
AYB base caller for Illumina sequencers and associated work

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