Assemblies
Multimeric state:
hetero 54-mer
Accessible surface area:
766227.27 Å2
Buried surface area:
383494.54 Å2
Dissociation area:
892.04
Å2
Dissociation energy (ΔGdiss):
-0.52
kcal/mol
Dissociation entropy (TΔSdiss):
8.49
kcal/mol
Symmetry number:
1
PDBe Complex ID:
PDB-CPX-243120
Macromolecules
Chain: A
Length: 204 amino acids
Theoretical weight: 24.48 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal L15
InterPro:
Length: 204 amino acids
Theoretical weight: 24.48 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P05748 (Residues: 1-204; Coverage: 100%)
Pfam: Ribosomal L15
InterPro:
Chain: B
Length: 199 amino acids
Theoretical weight: 22.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L13
InterPro:
Length: 199 amino acids
Theoretical weight: 22.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P26784 (Residues: 1-199; Coverage: 100%)
Pfam: Ribosomal protein L13
InterPro:
Chain: C
Length: 184 amino acids
Theoretical weight: 20.59 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L22p/L17e
InterPro:
Length: 184 amino acids
Theoretical weight: 20.59 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P05740 (Residues: 1-184; Coverage: 100%)
Pfam: Ribosomal protein L22p/L17e
InterPro:
Chain: D
Length: 186 amino acids
Theoretical weight: 20.61 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein 60S L18 and 50S L18e
InterPro:
Length: 186 amino acids
Theoretical weight: 20.61 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX49 (Residues: 1-186; Coverage: 100%)
Pfam: Ribosomal protein 60S L18 and 50S L18e
InterPro:
Chain: E
Length: 189 amino acids
Theoretical weight: 21.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L19e
InterPro:
Length: 189 amino acids
Theoretical weight: 21.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX82 (Residues: 1-189; Coverage: 100%)
Pfam: Ribosomal protein L19e
InterPro:
Chain: F
Length: 172 amino acids
Theoretical weight: 20.48 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
InterPro:
Length: 172 amino acids
Theoretical weight: 20.48 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX23 (Residues: 1-172; Coverage: 100%)
Pfam: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
InterPro:
Chain: G
Length: 160 amino acids
Theoretical weight: 18.28 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L21e
InterPro:
Length: 160 amino acids
Theoretical weight: 18.28 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: Q02753 (Residues: 1-160; Coverage: 100%)
Pfam: Ribosomal protein L21e
InterPro:
Chain: H
Length: 121 amino acids
Theoretical weight: 13.71 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal L22e protein family
InterPro:
Length: 121 amino acids
Theoretical weight: 13.71 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P05749 (Residues: 1-121; Coverage: 100%)
Pfam: Ribosomal L22e protein family
InterPro:
Chain: I
Length: 137 amino acids
Theoretical weight: 14.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L14p/L23e
InterPro:
Length: 137 amino acids
Theoretical weight: 14.49 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX41 (Residues: 1-137; Coverage: 100%)
Pfam: Ribosomal protein L14p/L23e
InterPro:
Chain: J
Length: 155 amino acids
Theoretical weight: 17.66 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L24e
InterPro:
Length: 155 amino acids
Theoretical weight: 17.66 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P04449 (Residues: 1-155; Coverage: 100%)
Pfam: Ribosomal protein L24e
InterPro:
Chain: K
Length: 142 amino acids
Theoretical weight: 15.79 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam:
InterPro:
Length: 142 amino acids
Theoretical weight: 15.79 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P04456 (Residues: 1-142; Coverage: 100%)
Pfam:
InterPro:
Chain: M
Length: 136 amino acids
Theoretical weight: 15.57 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal L27e protein family
InterPro:
Length: 136 amino acids
Theoretical weight: 15.57 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0C2H6 (Residues: 1-136; Coverage: 100%)
Pfam: Ribosomal L27e protein family
InterPro:
Chain: N
Length: 149 amino acids
Theoretical weight: 16.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Length: 149 amino acids
Theoretical weight: 16.76 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P02406 (Residues: 1-149; Coverage: 100%)
Pfam: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
InterPro:
Chain: O
Length: 59 amino acids
Theoretical weight: 6.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal L29e protein family
InterPro: Large ribosomal subunit protein eL29
Length: 59 amino acids
Theoretical weight: 6.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P05747 (Residues: 1-59; Coverage: 100%)
Pfam: Ribosomal L29e protein family
InterPro: Large ribosomal subunit protein eL29
Chain: P
Length: 105 amino acids
Theoretical weight: 11.43 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Length: 105 amino acids
Theoretical weight: 11.43 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P14120 (Residues: 1-105; Coverage: 100%)
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Chain: Q
Length: 113 amino acids
Theoretical weight: 12.98 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L31e
InterPro:
Length: 113 amino acids
Theoretical weight: 12.98 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0C2H8 (Residues: 1-113; Coverage: 100%)
Pfam: Ribosomal protein L31e
InterPro:
Chain: R
Length: 130 amino acids
Theoretical weight: 14.81 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L32
InterPro:
Length: 130 amino acids
Theoretical weight: 14.81 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P38061 (Residues: 1-130; Coverage: 100%)
Pfam: Ribosomal protein L32
InterPro:
Chain: S
Length: 107 amino acids
Theoretical weight: 12.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L35Ae
InterPro:
Length: 107 amino acids
Theoretical weight: 12.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P05744 (Residues: 1-107; Coverage: 100%)
Pfam: Ribosomal protein L35Ae
InterPro:
Chain: T
Length: 121 amino acids
Theoretical weight: 13.67 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L34e
InterPro:
Length: 121 amino acids
Theoretical weight: 13.67 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P87262 (Residues: 1-121; Coverage: 100%)
Pfam: Ribosomal protein L34e
InterPro:
Chain: U
Length: 120 amino acids
Theoretical weight: 13.94 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal L29 protein
InterPro:
Length: 120 amino acids
Theoretical weight: 13.94 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX84 (Residues: 1-120; Coverage: 100%)
Pfam: Ribosomal L29 protein
InterPro:
Chain: V
Length: 100 amino acids
Theoretical weight: 11.15 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L36e
InterPro:
Length: 100 amino acids
Theoretical weight: 11.15 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P05745 (Residues: 1-100; Coverage: 100%)
Pfam: Ribosomal protein L36e
InterPro:
Chain: W
Length: 88 amino acids
Theoretical weight: 9.88 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L37e
InterPro:
Length: 88 amino acids
Theoretical weight: 9.88 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P49166 (Residues: 1-88; Coverage: 100%)
Pfam: Ribosomal protein L37e
InterPro:
Chain: X
Length: 78 amino acids
Theoretical weight: 8.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal L38e protein family
InterPro:
Length: 78 amino acids
Theoretical weight: 8.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P49167 (Residues: 1-78; Coverage: 100%)
Pfam: Ribosomal L38e protein family
InterPro:
Chain: Y
Length: 51 amino acids
Theoretical weight: 6.36 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal L39 protein
InterPro:
Length: 51 amino acids
Theoretical weight: 6.36 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P04650 (Residues: 1-51; Coverage: 100%)
Pfam: Ribosomal L39 protein
InterPro:
Chain: Z
Length: 128 amino acids
Theoretical weight: 14.58 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam:
InterPro:
Length: 128 amino acids
Theoretical weight: 14.58 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CH08 (Residues: 1-128; Coverage: 100%)
Pfam:
InterPro:
Chain: b
Length: 106 amino acids
Theoretical weight: 12.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L44
InterPro:
Length: 106 amino acids
Theoretical weight: 12.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX27 (Residues: 1-106; Coverage: 100%)
Pfam: Ribosomal protein L44
InterPro:
Chain: c
Length: 92 amino acids
Theoretical weight: 10.11 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal L37ae protein family
InterPro:
Length: 92 amino acids
Theoretical weight: 10.11 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX25 (Residues: 1-92; Coverage: 100%)
Pfam: Ribosomal L37ae protein family
InterPro:
Chain: d
Length: 25 amino acids
Theoretical weight: 3.35 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L41
InterPro: Large ribosomal subunit protein eS32
Length: 25 amino acids
Theoretical weight: 3.35 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX86 (Residues: 1-25; Coverage: 100%)
Pfam: Ribosomal protein L41
InterPro: Large ribosomal subunit protein eS32
Chain: j
Length: 254 amino acids
Theoretical weight: 27.46 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam:
InterPro:
Length: 254 amino acids
Theoretical weight: 27.46 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX45 (Residues: 1-254; Coverage: 100%)
Pfam:
InterPro:
- Translation protein SH3-like domain superfamily
- Large ribosomal subunit protein uL2, domain 2
- Large ribosomal subunit protein uL2
- Nucleic acid-binding, OB-fold
- Large ribosomal subunit protein uL2, RNA-binding domain
- Large ribosomal subunit protein uL2, C-terminal
- Large ribosomal subunit protein uL2, domain 3
- Large ribosomal subunit protein uL2, conserved site
Chain: k
Length: 387 amino acids
Theoretical weight: 43.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L3
InterPro:
Length: 387 amino acids
Theoretical weight: 43.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P14126 (Residues: 1-387; Coverage: 100%)
Pfam: Ribosomal protein L3
InterPro:
Chain: n
Length: 176 amino acids
Theoretical weight: 20.02 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L6e
InterPro:
Length: 176 amino acids
Theoretical weight: 20.02 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P05739 (Residues: 1-176; Coverage: 100%)
Pfam: Ribosomal protein L6e
InterPro:
Chain: o
Length: 244 amino acids
Theoretical weight: 27.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam:
InterPro:
Length: 244 amino acids
Theoretical weight: 27.69 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P05737 (Residues: 1-244; Coverage: 100%)
Pfam:
InterPro:
- Large ribosomal subunit protein uL30
- Large ribosomal subunit protein uL30, eukaryotic
- Large ribosomal subunit protein uL30, N-terminal, eukaryotes
- Large ribosomal subunit protein uL30, eukaryotic/archaeal
- Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily
- Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain
- Large ribosomal subunit protein uL30, conserved site
Chain: p
Length: 256 amino acids
Theoretical weight: 28.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Length: 256 amino acids
Theoretical weight: 28.18 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P17076 (Residues: 1-256; Coverage: 100%)
Pfam: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
InterPro:
Chain: q
Length: 191 amino acids
Theoretical weight: 21.61 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L6
InterPro:
Length: 191 amino acids
Theoretical weight: 21.61 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P05738 (Residues: 1-191; Coverage: 100%)
Pfam: Ribosomal protein L6
InterPro:
Chain: r
Length: 221 amino acids
Theoretical weight: 25.41 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L16p/L10e
InterPro:
Length: 221 amino acids
Theoretical weight: 25.41 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P41805 (Residues: 1-221; Coverage: 100%)
Pfam: Ribosomal protein L16p/L10e
InterPro:
Chain: t
Length: 199 amino acids
Theoretical weight: 22.6 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L13e
InterPro:
Length: 199 amino acids
Theoretical weight: 22.6 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: Q12690 (Residues: 1-199; Coverage: 100%)
Pfam: Ribosomal protein L13e
InterPro:
Chain: u
Length: 138 amino acids
Theoretical weight: 15.2 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam:
InterPro:
Length: 138 amino acids
Theoretical weight: 15.2 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P36105 (Residues: 1-138; Coverage: 100%)
Pfam:
InterPro:
Chain: a
Length: 1038 amino acids
Theoretical weight: 119.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam:
Length: 1038 amino acids
Theoretical weight: 119.25 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: Q12532 (Residues: 1-1038; Coverage: 100%)
Pfam:
- NFACT N-terminal and middle domains
- NFACT protein RNA binding domain
- NFACT protein C-terminal domain
Chain: e
Length: 1562 amino acids
Theoretical weight: 180.37 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam:
Length: 1562 amino acids
Theoretical weight: 180.37 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: Q04781 (Residues: 1-1562; Coverage: 100%)
Pfam:
- E3 ubiquitin-protein ligase listerin, N-terminal domain
- LTN1 family HEAT repeat region
- Ubiquitin conjugating domain-like
- Ring finger domain
Chain: g
Length: 245 amino acids
Theoretical weight: 26.48 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: eIF-6 family
InterPro: Translation initiation factor IF6
Length: 245 amino acids
Theoretical weight: 26.48 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: Q12522 (Residues: 1-245; Coverage: 100%)
Pfam: eIF-6 family
InterPro: Translation initiation factor IF6
Chain: w
Length: 217 amino acids
Theoretical weight: 24.52 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam: Ribosomal protein L1p/L10e family
InterPro:
Length: 217 amino acids
Theoretical weight: 24.52 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX43 (Residues: 1-217; Coverage: 100%)
Pfam: Ribosomal protein L1p/L10e family
InterPro:
Chain: z
Length: 165 amino acids
Theoretical weight: 17.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam:
InterPro:
Length: 165 amino acids
Theoretical weight: 17.85 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P0CX54 (Residues: 1-165; Coverage: 100%)
Pfam:
InterPro:
- Ribosomal protein uL11
- Large ribosomal subunit protein uL11, N-terminal domain superfamily
- Large ribosomal subunit protein uL11, N-terminal
- Large ribosomal subunit protein uL11, C-terminal
- Large ribosomal subunit protein uL11, C-terminal domain superfamily
- Large ribosomal subunit protein uL11, conserved site
Chain: 1
Length: 18 amino acids
Theoretical weight: 1.55 KDa
Source organism: Saccharomyces cerevisiae
Length: 18 amino acids
Theoretical weight: 1.55 KDa
Source organism: Saccharomyces cerevisiae
Chain: v
Length: 157 amino acids
Theoretical weight: 17.22 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
Pfam:
Length: 157 amino acids
Theoretical weight: 17.22 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
- Canonical: P23301 (Residues: 1-157; Coverage: 100%)
Pfam:
- Translation initiation factor 5A-like, N-terminal
- Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
Name:
25S ribosomal RNA
Representative chains: f
Length: 3395 nucleotides
Theoretical weight: 1097.09 KDa
Rfam: Eukaryotic large subunit ribosomal RNA
Representative chains: f
Length: 3395 nucleotides
Theoretical weight: 1097.09 KDa
Rfam: Eukaryotic large subunit ribosomal RNA
Name:
5S ribosomal RNA
Representative chains: h
Length: 121 nucleotides
Theoretical weight: 38.95 KDa
Rfam: 5S ribosomal RNA
Representative chains: h
Length: 121 nucleotides
Theoretical weight: 38.95 KDa
Rfam: 5S ribosomal RNA
Name:
5.8S ribosomal RNA
Representative chains: i
Length: 158 nucleotides
Theoretical weight: 50.68 KDa
Rfam: 5.8S ribosomal RNA
Representative chains: i
Length: 158 nucleotides
Theoretical weight: 50.68 KDa
Rfam: 5.8S ribosomal RNA
Name:
Ala tRNA
Representative chains: x, y
Length: 76 nucleotides
Theoretical weight: 24.5 KDa
Rfam: tRNA
Representative chains: x, y
Length: 76 nucleotides
Theoretical weight: 24.5 KDa
Rfam: tRNA