Chemical Components in the PDB

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N : Summary

Code

N

One-letter code

N

Molecule name

ANY 5'-MONOPHOSPHATE NUCLEOTIDE

Synonyms

1-DEOXY-RIBOFURANOSE-5'-PHOSPHATE

Systematic names

ProgramVersionName
ACDLabs 10.04 1,4-anhydro-5-O-phosphono-D-ribitol
OpenEye OEToolkits 1.5.0 [(2R,3S,4S)-3,4-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate

Formula

C5 H11 O7 P

Formal charge

0

Molecular weight

214.11 Da

SMILES

TypeProgramVersionDescriptor
SMILES ACDLabs 10.04 O=P(OCC1OCC(O)C1O)(O)O
SMILES CACTVS 3.385 O[CH]1CO[CH](CO[P](O)(O)=O)[CH]1O
SMILES OpenEye OEToolkits 1.7.5 C1C(C(C(O1)COP(=O)(O)O)O)O
Canonical SMILES CACTVS 3.385 O[C@H]1CO[C@H](CO[P](O)(O)=O)[C@H]1O
Canonical SMILES OpenEye OEToolkits 1.7.5 C1[C@@H]([C@@H]([C@H](O1)COP(=O)(O)O)O)O

IUPAC InChI

InChI=1S/C5H11O7P/c6-3-1-11-4(5(3)7)2-12-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5-/m0/s1

IUPAC InChI key

CYZZKTRFOOKUMT-LMVFSUKVSA-N
N

wwPDB Information

Atom count

24 (13 without Hydrogen)

Polymer type

Ribonucleotide

Type description

RNA LINKING

Type code

ATOMN

Is modified

Yes

Standard parent

Not Assigned

Defined at

1999-07-13

Last modified at

2012-01-05

Status

Released

Obsoleted

Not Assigned