Chemical Components in the PDB

pdbe.org/chem
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  • BXX (Stereoisomer)
  • RIB (Stereoisomer)
  • Z6J (Stereoisomer)
  • 32O (Stereoisomer)
  • XYZ (Stereoisomer)
  • FUB (Stereoisomer)
  • BXY (Stereoisomer)
  • AHR (Stereoisomer)

BDR : Summary

Code

BDR

One-letter code

X

Molecule name

BETA-D-RIBOFURANOSYL

Systematic names

ProgramVersionName
ACDLabs 10.04 beta-D-ribofuranose
OpenEye OEToolkits 1.5.0 (2R,3R,4S,5R)-5-(hydroxymethyl)oxolane-2,3,4-triol

Formula

C5 H10 O5

Formal charge

0

Molecular weight

150.13 Da

SMILES

TypeProgramVersionDescriptor
SMILES ACDLabs 10.04 OC1C(OC(O)C1O)CO
SMILES CACTVS 3.341 OC[CH]1O[CH](O)[CH](O)[CH]1O
SMILES OpenEye OEToolkits 1.5.0 C(C1C(C(C(O1)O)O)O)O
Canonical SMILES CACTVS 3.341 OC[C@H]1O[C@@H](O)[C@H](O)[C@@H]1O
Canonical SMILES OpenEye OEToolkits 1.5.0 C([C@@H]1[C@H]([C@H]([C@@H](O1)O)O)O)O

IUPAC InChI

InChI=1S/C5H10O5/c6-1-2-3(7)4(8)5(9)10-2/h2-9H,1H2/t2-,3-,4-,5-/m1/s1

IUPAC InChI key

HMFHBZSHGGEWLO-TXICZTDVSA-N

Is part of

RPO
BDR

wwPDB Information

Atom count

20 (10 without Hydrogen)

Polymer type

Saccharide

Type description

D-saccharide, beta linking

Type code

ATOMS

Is modified

No

Standard parent

Not Assigned

Defined at

1999-07-08

Last modified at

2019-12-09

Status

Released

Obsoleted

Not Assigned